Miyakogusa Predicted Gene

Lj4g3v0336710.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr4

Full length sequence(42341900 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1K2S5_SOYBN 816 80.8 87.6 (tr|I1K2S5) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT3G26410.1 716 70.0 81.8 | Symbols: TRM11, AtTRM11 | methyltransferases;nucleic acid binding | chr3:9669508-9671273 REVERSE LENGTH=477

Medicago Medtr4g094315.1 785 78.7 85.5 | methyltransferase/nucleic acid-binding protein | HC | chr4:37714922-37710041 | 20130731

Soybean Glyma05g24950.1 816 80.8 87.6

LJGI gnl|LJGI|FS334720 1322 98.2 98.2 similar to UniRef100_A7Q6X1 Cluster: Chromosome chr12 scaffold_57, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr12 scaffold_57, whole genome shotgun sequence - Vitis vinifera (Grape), partial (48%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj4g3v0336710.1 length: 484 aa.

IPR000241 Putative RNA methylase domain

method AccNumber shortName E-value location

HMMPfam PF01170 UPF0020 2.1e-15 199-327

IPR002052 DNA methylase, N-6 adenine-specific, conserved site

Molecular Function GO:0003676 nucleic acid binding

Molecular Function GO:0008168 methyltransferase activity

Biological Process GO:0032259 methylation

PatternScan PS00092 N6_MTASE NA 305-311

IPR016691 tRNA guanosine-2'-O-methyltransferase, TRM11

Molecular Function GO:0008168 methyltransferase activity

HMMPIR PIRSF017259 tRNA 1.1e-196 1-478

ProfileScan PS51627 SAM_MT_TRM11 134.574 8-484

no_ID

Gene3D G3DSA:3.40.50.150 no description 2.5e-14 355-377

HMMPanther PTHR13370 RNA 1.1e-182 1-472

HMMPanther PTHR13370:SF0 SUBFAMILY 1.1e-182 1-472

Seg seg seg NA 33-40
312-328

superfamily SSF53335 S-adenosyl-L-methionine-dependent 7.2e-20 198-379

Wolf-PSORT

Lj4g3v0336710.1 cyto 8, chlo 4, cyto_nucl 4, cyto_pero 4, cyto_E.R. 4, cyto_plas 4

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj4g3v0336710.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1K2S5_SOYBN	816	80.8	87.6	(tr\|I1K2S5) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT3G26410.1	716	70.0	81.8	\| Symbols: TRM11, AtTRM11 \| methyltransferases;nucleic acid binding \| chr3:9669508-9671273 REVERSE LENGTH=477
Medicago	Medtr4g094315.1	785	78.7	85.5	\| methyltransferase/nucleic acid-binding protein \| HC \| chr4:37714922-37710041 \| 20130731
Soybean	Glyma05g24950.1	816	80.8	87.6
LJGI	gnl\|LJGI\|FS334720	1322	98.2	98.2	similar to UniRef100_A7Q6X1 Cluster: Chromosome chr12 scaffold_57, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr12 scaffold_57, whole genome shotgun sequence - Vitis vinifera (Grape), partial (48%)

IPR000241	Putative RNA methylase domain
Lj4g3v0336710.1				length: 484 aa.
method	AccNumber	shortName	E-value	location
HMMPfam	PF01170	UPF0020	2.1e-15	199-327
IPR002052	DNA methylase, N-6 adenine-specific, conserved site
Molecular Function	GO:0003676	nucleic acid binding
Molecular Function	GO:0008168	methyltransferase activity
Biological Process	GO:0032259	methylation
PatternScan	PS00092	N6_MTASE	NA	305-311
IPR016691	tRNA guanosine-2'-O-methyltransferase, TRM11
Molecular Function	GO:0008168	methyltransferase activity
HMMPIR	PIRSF017259	tRNA	1.1e-196	1-478
ProfileScan	PS51627	SAM_MT_TRM11	134.574	8-484
no_ID
Gene3D	G3DSA:3.40.50.150	no description	2.5e-14	355-377
HMMPanther	PTHR13370	RNA	1.1e-182	1-472
HMMPanther	PTHR13370:SF0	SUBFAMILY	1.1e-182	1-472
Seg	seg	seg	NA	33-40 312-328
superfamily	SSF53335	S-adenosyl-L-methionine-dependent	7.2e-20	198-379