Miyakogusa Predicted Gene

Lj4g3v0310490.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3S890_LOTJA 579 99.6 99.6 (tr|I3S890) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT5G37930.1 207 35.6 52.1 | Symbols: | Protein with RING/U-box and TRAF-like domains | chr5:15102239-15103651 REVERSE LENGTH=349
Medicago Medtr4g094468.1 395 61.4 70.7 | E3 ubiquitin-protein ligase SINA-like protein | HC | chr4:38039941-38043054 | 20130731
Soybean Glyma05g25420.1 399 62.7 72.4  
LJGI gnl|LJGI|TC63709 1931 99.8 99.8 weakly similar to UniRef100_A7PR55 Cluster: Chromosome chr14 scaffold_26, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_26, whole genome shotgun sequence - Vitis vinifera (Grape), partial (33%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v0310490.1 length: 328 aa.
IPR001841 Zinc finger, RING-type
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
ProfileScan PS50089 ZF_RING_2 8.845 101-136
IPR004162 Seven-in-absentia protein, sina
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006511 ubiquitin-dependent protein catabolic process    
Biological Process GO:0007275 multicellular organismal development    
HMMPanther PTHR10315 SEVEN 2.5e-66 26-325
IPR008974 TRAF-like
Molecular Function GO:0005515 protein binding    
superfamily SSF49599 TRAF 2.9e-22 154-327
IPR013010 Zinc finger, SIAH-type
Molecular Function GO:0008270 zinc ion binding    
ProfileScan PS51081 ZF_SIAH 12.044 154-212
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 1.5e-08 87-166
IPR013323 SIAH-type domain
Molecular Function GO:0004842 ubiquitin-protein ligase activity    
Molecular Function GO:0008270 zinc ion binding    
Biological Process GO:0016567 protein ubiquitination    
Gene3D G3DSA:3.90.890.10 no description 1.1e-13 167-207
IPR018121 Seven-in-absentia protein, TRAF-like domain
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006511 ubiquitin-dependent protein catabolic process    
Biological Process GO:0007275 multicellular organismal development    
HMMPfam PF03145 Sina 2.7e-14 144-235
no_ID  
HMMPanther PTHR10315:SF3 SEVEN 2.5e-66 26-325
Seg seg seg NA 26-44
Wolf-PSORT
Lj4g3v0310490.1	nucl 12, cyto 1, cysk 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v0310490.1