Miyakogusa Predicted Gene

Lj4g3v0280790.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr4

Full length sequence(42341900 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I3S5Q5_LOTJA 223 75.9 75.9 (tr|I3S5Q5) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1

TAIR_pep AT2G34450.1 147 53.2 68.3 | Symbols: | HMG-box (high mobility group) DNA-binding family protein | chr2:14527918-14529448 REVERSE LENGTH=151

Medicago Medtr4g094622.1 173 72.4 78.4 | high mobility group (HMG)-box protein | HC | chr4:38397399-38400649 | 20130731

Soybean Glyma08g08840.1 179 68.5 76.9

LJGI gnl|LJGI|TC73673 922 100.0 100.0 similar to UniRef100_A7QQN2 Cluster: Chromosome undetermined scaffold_143, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_143, whole genome shotgun sequence - Vitis vinifera (Grape), partial (52%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj4g3v0280790.1 length: 158 aa.

IPR009071 High mobility group (HMG) box domain

method AccNumber shortName E-value location

Gene3D G3DSA:1.10.30.10 no description 2.6e-19 68-142

HMMPfam PF00505 HMG_box 8.8e-19 70-139

HMMSmart SM00398 high 4.1e-19 69-140

ProfileScan PS50118 HMG_BOX_2 17.295 70-139

superfamily SSF47095 HMG-box 7.3e-21 50-138

no_ID

HMMPanther PTHR13711 SWI/SNF-RELATED 1.1e-20 38-156

HMMPanther PTHR13711:SF39 SUBFAMILY 1.1e-20 38-156

Seg seg seg NA 8-20
44-63

Wolf-PSORT

Lj4g3v0280790.1 chlo 13

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj4g3v0280790.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I3S5Q5_LOTJA	223	75.9	75.9	(tr\|I3S5Q5) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep	AT2G34450.1	147	53.2	68.3	\| Symbols: \| HMG-box (high mobility group) DNA-binding family protein \| chr2:14527918-14529448 REVERSE LENGTH=151
Medicago	Medtr4g094622.1	173	72.4	78.4	\| high mobility group (HMG)-box protein \| HC \| chr4:38397399-38400649 \| 20130731
Soybean	Glyma08g08840.1	179	68.5	76.9
LJGI	gnl\|LJGI\|TC73673	922	100.0	100.0	similar to UniRef100_A7QQN2 Cluster: Chromosome undetermined scaffold_143, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome undetermined scaffold_143, whole genome shotgun sequence - Vitis vinifera (Grape), partial (52%)

IPR009071	High mobility group (HMG) box domain
Lj4g3v0280790.1				length: 158 aa.
method	AccNumber	shortName	E-value	location
Gene3D	G3DSA:1.10.30.10	no description	2.6e-19	68-142
HMMPfam	PF00505	HMG_box	8.8e-19	70-139
HMMSmart	SM00398	high	4.1e-19	69-140
ProfileScan	PS50118	HMG_BOX_2	17.295	70-139
superfamily	SSF47095	HMG-box	7.3e-21	50-138
no_ID
HMMPanther	PTHR13711	SWI/SNF-RELATED	1.1e-20	38-156
HMMPanther	PTHR13711:SF39	SUBFAMILY	1.1e-20	38-156
Seg	seg	seg	NA	8-20 44-63