Miyakogusa Predicted Gene

Lj4g3v0258690.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7JDY9_MEDTR 1340 83.8 90.2 (tr|G7JDY9) DNA replication licensing factor MCM3-like protein OS=Medicago truncatula GN=MTR_4g096700 PE=3 SV=1
TAIR_pep AT5G46280.1 1118 70.4 80.9 | Symbols: MCM3 | Minichromosome maintenance (MCM2/3/5) family protein | chr5:18769902-18773606 REVERSE LENGTH=776
Medicago Medtr4g096700.1 1340 83.8 90.2 | DNA replication licensing factor MCM4 | HC | chr4:38477887-38484349 | 20130731
Soybean Glyma05g25980.1 1303 81.7 89.1  
LJGI gnl|LJGI|TC78525 1178 98.8 98.8 similar to UniRef100_A7QQN5 Cluster: Chromosome undetermined scaffold_143, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_143, whole genome shotgun sequence - Vitis vinifera (Grape), partial (23%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v0258690.1 length: 773 aa.
IPR001208 Mini-chromosome maintenance, DNA-dependent ATPase
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006260 DNA replication    
FPrintScan PR01657 MCMFAMILY 1.5e-32 330-345
390-404
418-431
442-454
469-477
HMMPfam PF00493 MCM 2.5e-130 277-639
HMMSmart SM00350 minichromosome 3.6e-267 104-643
ProfileScan PS50051 MCM_2 94.710 289-495
IPR003593 AAA+ ATPase domain
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0017111 nucleoside-triphosphatase activity    
HMMSmart SM00382 ATPases 2.2e-06 331-484
IPR008046 DNA replication licensing factor Mcm3
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003678 DNA helicase activity    
Molecular Function GO:0005524 ATP binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006270 DNA replication initiation    
Cellular Component GO:0042555 MCM complex    
FPrintScan PR01659 MCMPROTEIN3 1.5e-26 181-195
207-219
458-468
491-501
630-645
IPR012340 Nucleic acid-binding, OB-fold
Gene3D G3DSA:2.40.50.140 no description 8.3e-30 189-260
superfamily SSF50249 Nucleic 2.7e-60 10-259
IPR018525 Mini-chromosome maintenance, conserved site
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006260 DNA replication    
PatternScan PS00847 MCM_1 NA 398-406
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 9e-41 293-666
no_ID  
Coil coil coiled-coil NA 644-668
Gene3D G3DSA:3.30.1640.10 no description 8.4e-11 5-84
Gene3D G3DSA:3.40.50.300 no description 2.7e-39 299-479
HMMPanther PTHR11630 DNA 0 1-771
HMMPanther PTHR11630:SF46 DNA 0 1-771
Seg seg seg NA 506-519
646-665
Wolf-PSORT
Lj4g3v0258690.1	nucl 5, cyto 5, cyto_nucl 5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v0258690.1