Miyakogusa Predicted Gene

Lj4g3v0244130.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1KRH4_SOYBN 418 89.8 92.9 (tr|I1KRH4) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G58230.1 392 83.2 89.4 | Symbols: MSI1, MEE70, ATMSI1 | Transducin/WD40 repeat-like superfamily protein | chr5:23556112-23557994 FORWARD LENGTH=424
Medicago Medtr4g096880.1 393 87.6 91.2 | nucleosome/chromatin assembly factor group protein | HC | chr4:38572918-38568681 | 20130731
Soybean Glyma08g09090.1 418 89.8 92.9  
LJGI gnl|LJGI|TC58316 1324 100.0 100.0 homologue to UniRef100_A8VFK7 Cluster: MSI1; n=1; Glycine max|Rep: MSI1 - Glycine max (Soybean), partial (58%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v0244130.1 length: 223 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.00014 169-204
HMMSmart SM00320 WD40 0.0017 112-151
164-204
ProfileScan PS50082 WD_REPEATS_2 10.241 171-213
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 1.1e-11 107-212
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 9.942 171-213
superfamily SSF50978 WD40 1.2e-10 114-210
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 191-205
IPR022052 Histone-binding protein RBBP4
HMMPfam PF12265 CAF1C_H4-bd 3.5e-29 18-88
no_ID  
HMMPanther PTHR22850 WD40 2.4e-111 1-222
HMMPanther PTHR22850:SF27 RETINOBLASTOMA-BINDING 2.4e-111 1-222
Seg seg seg NA 4-14
Wolf-PSORT
Lj4g3v0244130.1	cyto 6, nucl 5, extr 1, cysk 1, golg 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v0244130.1