Miyakogusa Predicted Gene

Lj4g3v0244120.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr4

Full length sequence(42341900 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1KRH4_SOYBN 781 92.2 94.9 (tr|I1KRH4) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT5G58230.1 755 88.3 93.2 | Symbols: MSI1, MEE70, ATMSI1 | Transducin/WD40 repeat-like superfamily protein | chr5:23556112-23557994 FORWARD LENGTH=424

Medicago Medtr4g096880.1 751 89.7 93.9 | nucleosome/chromatin assembly factor group protein | HC | chr4:38572918-38568681 | 20130731

Soybean Glyma08g09090.1 781 92.2 94.9

LJGI gnl|LJGI|TC58316 1459 99.9 99.9 homologue to UniRef100_A8VFK7 Cluster: MSI1; n=1; Glycine max|Rep: MSI1 - Glycine max (Soybean), partial (58%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj4g3v0244120.1 length: 406 aa.

IPR001680 WD40 repeat

method AccNumber shortName E-value location

Molecular Function GO:0005515 protein binding

HMMPfam PF00400 WD40 0.00011 169-204
219-254
262-300
307-344
363-400

HMMSmart SM00320 WD40 0.0014 112-151
164-204
214-254
260-300
304-344
361-401

ProfileScan PS50082 WD_REPEATS_2 9.807 171-213
267-302
311-353
368-406

IPR015943 WD40/YVTN repeat-like-containing domain

Molecular Function GO:0005515 protein binding

Gene3D G3DSA:2.130.10.10 no description 3.1e-53 108-403

IPR017986 WD40-repeat-containing domain

Molecular Function GO:0005515 protein binding

ProfileScan PS50294 WD_REPEATS_REGION 29.029 171-406

superfamily SSF50978 WD40 3.8e-49 100-401

IPR019775 WD40 repeat, conserved site

PatternScan PS00678 WD_REPEATS_1 NA 191-205

IPR020472 G-protein beta WD-40 repeat

FPrintScan PR00320 GPROTEINBRPT 5.5e-06 191-205
287-301
388-402

IPR022052 Histone-binding protein RBBP4

HMMPfam PF12265 CAF1C_H4-bd 1e-28 18-88

no_ID

HMMPanther PTHR22850 WD40 1.5e-234 1-406

HMMPanther PTHR22850:SF27 RETINOBLASTOMA-BINDING 1.5e-234 1-406

Seg seg seg NA 4-14

Wolf-PSORT

Lj4g3v0244120.1 nucl 8, cyto 3, chlo 1, extr 1, vacu 1

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj4g3v0244120.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1KRH4_SOYBN	781	92.2	94.9	(tr\|I1KRH4) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT5G58230.1	755	88.3	93.2	\| Symbols: MSI1, MEE70, ATMSI1 \| Transducin/WD40 repeat-like superfamily protein \| chr5:23556112-23557994 FORWARD LENGTH=424
Medicago	Medtr4g096880.1	751	89.7	93.9	\| nucleosome/chromatin assembly factor group protein \| HC \| chr4:38572918-38568681 \| 20130731
Soybean	Glyma08g09090.1	781	92.2	94.9
LJGI	gnl\|LJGI\|TC58316	1459	99.9	99.9	homologue to UniRef100_A8VFK7 Cluster: MSI1; n=1; Glycine max\|Rep: MSI1 - Glycine max (Soybean), partial (58%)

IPR001680	WD40 repeat
Lj4g3v0244120.1				length: 406 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005515	protein binding
HMMPfam	PF00400	WD40	0.00011	169-204 219-254 262-300 307-344 363-400
HMMSmart	SM00320	WD40	0.0014	112-151 164-204 214-254 260-300 304-344 361-401
ProfileScan	PS50082	WD_REPEATS_2	9.807	171-213 267-302 311-353 368-406
IPR015943	WD40/YVTN repeat-like-containing domain
Molecular Function	GO:0005515	protein binding
Gene3D	G3DSA:2.130.10.10	no description	3.1e-53	108-403
IPR017986	WD40-repeat-containing domain
Molecular Function	GO:0005515	protein binding
ProfileScan	PS50294	WD_REPEATS_REGION	29.029	171-406
superfamily	SSF50978	WD40	3.8e-49	100-401
IPR019775	WD40 repeat, conserved site
PatternScan	PS00678	WD_REPEATS_1	NA	191-205
IPR020472	G-protein beta WD-40 repeat
FPrintScan	PR00320	GPROTEINBRPT	5.5e-06	191-205 287-301 388-402
IPR022052	Histone-binding protein RBBP4
HMMPfam	PF12265	CAF1C_H4-bd	1e-28	18-88
no_ID
HMMPanther	PTHR22850	WD40	1.5e-234	1-406
HMMPanther	PTHR22850:SF27	RETINOBLASTOMA-BINDING	1.5e-234	1-406
Seg	seg	seg	NA	4-14