Miyakogusa Predicted Gene
- Lj4g3v0190020.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr4
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1M221_SOYBN |
103 |
32.1 |
45.9 |
(tr|I1M221) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT5G66940.1 |
91.7 |
47.3 |
62.7 |
| Symbols: | Dof-type zinc finger DNA-binding family protein | chr5:26727989-26728666 REVERSE LENGTH=225 |
| Medicago |
Medtr4g022370.1 |
93.2 |
64.2 |
84.9 |
| Dof domain zinc finger protein | HC | chr4:7434526-7436301 | 20130731 |
| Soybean |
Glyma13g31110.1 |
103 |
32.1 |
45.9 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj4g3v0190020.1 |
length: 288 aa. |
| IPR003851 |
Zinc finger, Dof-type |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| Biological Process |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
|
| Molecular Function |
GO:0008270 |
zinc ion binding |
|
|
| BlastProDom |
PD007478 |
Q6RK62_WHEAT_Q6RK62; |
2e-17 |
3-53 |
| HMMPfam |
PF02701 |
zf-Dof |
1.4e-26 |
2-54 |
| PatternScan |
PS01361 |
ZF_DOF_1 |
NA |
8-44 |
| ProfileScan |
PS50884 |
ZF_DOF_2 |
23.636 |
6-60 |
| no_ID |
|
| HMMPanther |
PTHR31992 |
FAMILY |
1.2e-20 |
3-58 |
| HMMPanther |
PTHR31992:SF0 |
SUBFAMILY |
1.2e-20 |
3-58 |
- Wolf-PSORT
Lj4g3v0190020.1 nucl 10, chlo 2, cyto 1, vacu 1, chlo_mito 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj4g3v0190020.1 |
|