Miyakogusa Predicted Gene
- Lj4g3v0153960.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr4
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
H9CDQ2_SOYBN |
1213 |
78.2 |
86.2 |
(tr|H9CDQ2) SOS1 OS=Glycine max GN=SOS1 PE=2 SV=1 |
| TAIR_pep |
AT2G01980.1 |
877 |
60.2 |
76.0 |
| Symbols: SOS1, ATSOS1, ATNHX7 | sodium proton exchanger, putative (NHX7) (SOS1) | chr2:457070-463145 FORWARD LENGTH=1146 |
| Medicago |
--No_Hits--
|
|
|
|
|
| Soybean |
Glyma08g09730.1 |
1177 |
77.4 |
85.2 |
|
| LJGI |
gnl|LJGI|TC68851 |
2276 |
99.4 |
99.4 |
similar to UniRef100_Q19N58 Cluster: Na+/H+ antiporter; n=1; Populus euphratica|Rep: Na+/H+ antiporter - Populus euphratica (Euphrates poplar), partial (41%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj4g3v0153960.1 |
length: 750 aa. |
| IPR000595 |
Cyclic nucleotide-binding domain |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF00027 |
cNMP_binding |
6.2e-06 |
450-531 |
| ProfileScan |
PS50042 |
CNMP_BINDING_3 |
7.964 |
424-519 |
| IPR014710 |
RmlC-like jelly roll fold |
| Gene3D |
G3DSA:2.60.120.10 |
no description |
7.5e-06 |
420-539 |
| IPR018418 |
Na+/H+ exchanger, isoforms 7/8 |
| HMMPanther |
PTHR10110:SF4 |
SODIUM/HYDROGEN |
1.3e-143 |
1-546 |
| IPR018422 |
Cation/H+ exchanger, CPA1 family |
| Biological Process |
GO:0006812 |
cation transport |
|
|
| Molecular Function |
GO:0015299 |
solute:hydrogen antiporter activity |
|
|
| Cellular Component |
GO:0016021 |
integral to membrane |
|
|
| HMMPanther |
PTHR10110 |
SODIUM/HYDROGEN |
1.3e-143 |
1-546 |
| IPR018490 |
Cyclic nucleotide-binding-like |
| superfamily |
SSF51206 |
cAMP-binding |
8.3e-14 |
422-554 |
- Wolf-PSORT
Lj4g3v0153960.1 cyto 3, E.R. 3, cyto_E.R. 3, extr 2, vacu 2, cyto_nucl 2, E.R._plas 2, cyto_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj4g3v0153960.1 |
Not targeted |
-42.095 |
0 |
-15.371 |
58.16% |
-26.724
|