Miyakogusa Predicted Gene

Lj4g3v0151610.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL B9HZ40_POPTR 750 56.5 75.3 (tr|B9HZ40) Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_770877 PE=4 SV=1
TAIR_pep AT1G11710.1 619 48.5 67.2 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:3948886-3950859 FORWARD LENGTH=657
Medicago Medtr5g090210.1 303 29.9 52.4 | PPR containing plant-like protein | HC | chr5:39298399-39301458 | 20130731
Soybean Glyma14g03860.1 279 31.6 52.3  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v0151610.2 length: 647 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.021 214-242
497-525
HMMPfam PF12854 PPR_1 3.7e-09 242-273
HMMPfam PF13041 PPR_2 1.5e-14 283-332
353-402
424-472
529-576
HMMPfam PF13812 PPR_3 0.0022 600-632
HMMTigr TIGR00756 PPR: 0.00098 214-247
248-273
286-320
322-355
356-389
427-460
464-494
497-526
531-563
565-599
600-633
ProfileScan PS51375 PPR 9.821 91-126
141-175
211-245
176-210
246-276
284-318
319-353
354-388
389-423
424-458
459-493
528-562
494-524
563-597
598-632
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 7.1e-07 319-593
no_ID  
HMMPanther PTHR24015 FAMILY 4e-137 1-641
HMMPanther PTHR24015:SF0 SUBFAMILY 4e-137 1-641
Seg seg seg NA 439-448
superfamily SSF81901 HCP-like 7.2e-07 357-611
Wolf-PSORT
Lj4g3v0151610.2	chlo 4, cyto 4, nucl 3, mito 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v0151610.2