Miyakogusa Predicted Gene

Lj4g3v0133580.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7J0W0_SOYBN 414 64.5 70.5 (tr|A7J0W0) KNT1 OS=Glycine max PE=2 SV=1
TAIR_pep AT1G62360.1 347 71.7 80.2 | Symbols: STM, BUM1, SHL, WAM1, BUM, WAM | KNOX/ELK homeobox transcription factor | chr1:23058796-23061722 REVERSE LENGTH=382
Medicago Medtr2g024390.1 382 59.2 67.5 | homeobox knotted-like protein | HC | chr2:8797446-8791813 | 20130731
Soybean Glyma07g39350.1 414 64.5 70.5  
LJGI gnl|LJGI|BP036080 498 100.0 100.0 similar to UniRef100_A3QNN5 Cluster: Homeodomain protein Kn1; n=1; Prunus dulcis|Rep: Homeodomain protein Kn1 - Prunus dulcis (Almond) (Prunus amygdalus), partial (21%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v0133580.1 length: 352 aa.
IPR001356 Homeodomain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0043565 sequence-specific DNA binding    
HMMSmart SM00389 Homeodomain 2.3e-12 255-320
ProfileScan PS50071 HOMEOBOX_2 13.021 253-316
IPR005539 ELK
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
HMMPfam PF03789 ELK 1.4e-10 233-254
ProfileScan PS51213 ELK 10.842 233-253
IPR005540 KNOX1
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
HMMPfam PF03790 KNOX1 7.3e-22 98-139
IPR005541 KNOX2
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
HMMPfam PF03791 KNOX2 1.1e-24 149-198
IPR008422 Homeobox KN domain
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF05920 Homeobox_KN 7e-16 273-312
IPR009057 Homeodomain-like
Molecular Function GO:0003677 DNA binding    
Gene3D G3DSA:1.10.10.60 no description 3.9e-27 258-317
superfamily SSF46689 Homeodomain-like 1.6e-18 254-331
IPR017970 Homeobox, conserved site
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0043565 sequence-specific DNA binding    
PatternScan PS00027 HOMEOBOX_1 NA 291-314
no_ID  
HMMPanther PTHR11850 HOMEOBOX 1.5e-56 75-326
HMMPanther PTHR11850:SF15 HOMEOBOX 1.5e-56 75-326
Seg seg seg NA 58-74
91-102
135-150
Wolf-PSORT
Lj4g3v0133580.1	nucl 14
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v0133580.1