Miyakogusa Predicted Gene

Lj4g3v0000060.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL B9N789_POPTR 979 67.9 75.1 (tr|B9N789) Cl-channel clc-7 OS=Populus trichocarpa GN=POPTRDRAFT_811492 PE=4 SV=1
TAIR_pep AT5G49890.1 945 64.1 71.5 | Symbols: CLC-C, ATCLC-C | chloride channel C | chr5:20288489-20292143 REVERSE LENGTH=779
Medicago Medtr4g134730.1 1047 72.9 77.7 | chloride channel ClC1 protein | HC | chr4:56472038-56468646 | 20130731
Soybean Glyma09g28620.1 773 59.6 67.3  
LJGI gnl|LJGI|TC72370 77.8 79.9 79.9 similar to UniRef100_A7QR06 Cluster: Chromosome undetermined scaffold_147, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_147, whole genome shotgun sequence - Vitis vinifera (Grape), partial (31%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v0000060.1 length: 763 aa.
IPR000644 Cystathionine beta-synthase, core
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00571 CBS 0.0034 584-644
701-748
ProfileScan PS51371 CBS 9.485 587-649
699-762
IPR001807 Chloride channel, voltage gated
Molecular Function GO:0005247 voltage-gated chloride channel activity    
Biological Process GO:0006821 chloride transport    
Cellular Component GO:0016020 membrane    
Biological Process GO:0055085 transmembrane transport    
FPrintScan PR00762 CLCHANNEL 4.3e-62 149-166
180-199
244-263
470-490
502-518
520-539
558-572
HMMPfam PF00654 Voltage_CLC 1.5e-88 136-552
IPR002251 Chloride channel ClC-plant
Molecular Function GO:0005247 voltage-gated chloride channel activity    
Biological Process GO:0006821 chloride transport    
Cellular Component GO:0016020 membrane    
FPrintScan PR01120 CLCHANNELPLT 6.8e-23 54-62
265-273
279-289
297-304
422-438
IPR014743 Chloride channel, core
Molecular Function GO:0005216 ion channel activity    
Biological Process GO:0055085 transmembrane transport    
Gene3D G3DSA:1.10.3080.10 no description 4.9e-123 426-576
superfamily SSF81340 Clc 8.7e-102 57-575
no_ID  
Gene3D G3DSA:3.10.580.10 no description 1.5e-10 686-749
HMMPanther PTHR11689 CHLORIDE 0 2-758
HMMPanther PTHR11689:SF11 CHLORIDE 0 2-758
Seg seg seg NA 15-26
242-258
277-287
325-339
502-515
523-546
630-643
712-728
superfamily SSF54631 CBS-domain 3.9e-08 691-749
572-654
Wolf-PSORT
Lj4g3v0000060.1	plas 6, vacu 4, E.R. 3, nucl_plas 3, golg_plas 3, cysk_plas 3, mito_plas 3, cyto_plas 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v0000060.1