Miyakogusa Predicted Gene

Lj3g3v3752290.3
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7LS80_SOYBN 3273 82.5 86.3 (tr|K7LS80) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT3G54280.1 2402 62.3 74.3 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases | chr3:20092361-20103807 FORWARD LENGTH=2045
Medicago Medtr4g035100.1 3222 81.0 85.8 | TATA-binding protein associated factor-like protein | HC | chr4:12002197-12022121 | 20130731
Soybean Glyma12g00450.1 3264 82.4 86.2  
LJGI gnl|LJGI|BU494199 1049 99.3 99.3 homologue to UniRef100_A7PSP4 Cluster: Chromosome chr6 scaffold_28, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr6 scaffold_28, whole genome shotgun sequence - Vitis vinifera (Grape), partial (11%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v3752290.3 length: 1978 aa.
IPR000330 SNF2-related
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00176 SNF2_N 8.4e-69 1457-1768
IPR001650 Helicase, C-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 4.4e-11 1858-1932
HMMSmart SM00490 helicase 2.7e-16 1846-1932
ProfileScan PS51194 HELICASE_CTER 13.775 1804-1978
IPR011989 Armadillo-like helical
Gene3D G3DSA:1.25.10.10 no description 8.3e-79 1120-1586
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 1.1e-27 1450-1646
ProfileScan PS51192 HELICASE_ATP_BIND_1 20.468 1466-1636
IPR016024 Armadillo-type fold
Molecular Function GO:0005488 binding    
superfamily SSF48371 ARM 1.7e-67 5-1496
IPR022707 Domain of unknown function DUF3535
HMMPfam PF12054 DUF3535 6.6e-99 783-1238
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 4.7e-59 1443-1686
1687-1978
no_ID  
Gene3D G3DSA:3.40.50.300 no description 1.2e-14 1795-1966
HMMPanther PTHR10799 SWI/SNF-RELATED 0 500-1978
HMMPanther PTHR10799:SF225TATA-BINDING PROTEIN-ASSOCIATED 0 500-1978
HMMPfam PF13513 HEAT_EZ 0.0011 568-619
Seg seg seg NA 3-15
284-295
390-404
606-629
640-651
690-698
744-755
958-969
1081-1092
1208-1219
1285-1298
1369-1381
1890-1904
Wolf-PSORT
Lj3g3v3752290.3	chlo 9, mito 1.5, cyto_mito 1.5, nucl 1, plas 1, pero 1, nucl_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v3752290.3