Miyakogusa Predicted Gene

Lj3g3v3725550.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1LNT7_SOYBN 900 73.1 76.0 (tr|I1LNT7) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G51300.3 713 78.0 84.0 | Symbols: | splicing factor-related | chr5:20849881-20852295 REVERSE LENGTH=804
Medicago Medtr4g036415.1 853 70.2 72.4 | splicing factor-like protein | HC | chr4:13104578-13109685 | 20130731
Soybean Glyma12g00850.1 900 73.1 76.0  
LJGI gnl|LJGI|TC79480 850 100.0 100.0 similar to UniRef100_Q0JDQ4 Cluster: Os04g0385700 protein; n=1; Oryza sativa Japonica Group|Rep: Os04g0385700 protein - Oryza sativa subsp. japonica (Rice), partial (14%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v3725550.1 length: 632 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 7.7e-19 333-402
HMMSmart SM00360 RNA 4e-23 332-405
ProfileScan PS50102 RRM 18.172 331-409
IPR001878 Zinc finger, CCHC-type
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
Gene3D G3DSA:4.10.60.10 no description 1.9e-06 214-255
HMMSmart SM00343 zinc 0.3 214-230
240-256
ProfileScan PS50158 ZF_CCHC 8.713 215-229
241-255
superfamily SSF57756 Retrovirus 1.2e-08 201-260
IPR004087 K Homology domain
Molecular Function GO:0003723 RNA binding    
HMMSmart SM00322 K 1.5e-09 93-185
IPR004088 K Homology domain, type 1
Molecular Function GO:0003723 RNA binding    
HMMPfam PF00013 KH_1 2.1e-07 108-177
ProfileScan PS50084 KH_TYPE_1 10.064 108-180
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 4.6e-24 326-410
no_ID  
FPrintScan PR01217 PRICHEXTENSN 6e-10 468-480
487-503
540-561
562-578
594-619
Gene3D G3DSA:3.30.1370.10 no description 1.3e-40 90-212
HMMPanther PTHR11208 RNA-BINDING 6.1e-148 9-619
HMMPanther PTHR11208:SF6 KH 6.1e-148 9-619
Seg seg seg NA 304-323
406-428
461-480
484-511
544-576
superfamily SSF54791 Eukaryotic 5.7e-32 92-219
superfamily SSF54928 RNA-binding 1e-25 321-429
Wolf-PSORT
Lj3g3v3725550.1	nucl 6, cyto 5, chlo 1, mito 1, pero 1, chlo_mito 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v3725550.1