Miyakogusa Predicted Gene

Lj3g3v3690050.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3T213_LOTJA 243 100.0 100.0 (tr|I3T213) Uncharacterized protein OS=Lotus japonicus PE=4 SV=1
TAIR_pep AT3G52090.1 213 84.5 94.8 | Symbols: ATRPB13.6, NRPB11, NRPD11, NRPE11 | DNA-directed RNA polymerase, RBP11-like | chr3:19318069-19318998 REVERSE LENGTH=116
Medicago Medtr4g037750.1 227 90.5 97.4 | DNA-directed RNA polymerase II subunit RPB11-like protein | HC | chr4:13948941-13951486 | 20130731
Soybean Glyma09g36280.1 234 94.8 99.1  
LJGI gnl|LJGI|TC66811 696 100.0 100.0 homologue to UniRef100_A7P675 Cluster: Chromosome chr4 scaffold_6, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_6, whole genome shotgun sequence - Vitis vinifera (Grape), partial (91%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v3690050.1 length: 116 aa.
IPR008193 DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
PatternScan PS01154 RNA_POL_L_13KD NA 35-66
IPR009025 DNA-directed RNA polymerase, RBP11-like
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
superfamily SSF55257 RBP11-like 5.6e-35 1-114
no_ID  
Coil coil coiled-coil NA 84-105
Gene3D G3DSA:3.30.1360.10 no description 2.6e-50 1-113
HMMPanther PTHR13946 DNA-DIRECTED 8.5e-62 1-113
HMMPanther PTHR13946:SF16 DNA-DIRECTED 8.5e-62 1-113
HMMPfam PF13656 RNA_pol_L_2 1.5e-24 29-105
Wolf-PSORT
Lj3g3v3690050.1	cyto 6, nucl 5, extr 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v3690050.1