Miyakogusa Predicted Gene

Lj3g3v3652410.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1LNZ6_SOYBN 625 72.0 76.0 (tr|I1LNZ6) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT3G51950.2 331 48.5 55.8 | Symbols: | Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein | chr3:19278244-19280407 REVERSE LENGTH=540
Medicago Medtr3g436060.1 514 62.5 70.0 | RNA-binding domain CCCH-type zinc finger protein | HC | chr3:12079943-12084739 | 20130731
Soybean Glyma12g01350.1 625 72.0 76.0  
LJGI gnl|LJGI|TC64681 1580 99.9 99.9 similar to UniRef100_A7Q1Y9 Cluster: Chromosome chr13 scaffold_45, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr13 scaffold_45, whole genome shotgun sequence - Vitis vinifera (Grape), partial (23%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v3652410.2 length: 449 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMSmart SM00360 RNA 1.3e-07 349-419
ProfileScan PS50102 RRM 9.422 348-424
IPR000571 Zinc finger, CCCH-type
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
Gene3D G3DSA:4.10.1000.10 no description 0.00057 219-240
HMMPfam PF00642 zf-CCCH 3.5e-05 220-240
HMMSmart SM00356 zinc 0.00099 217-241
ProfileScan PS50103 ZF_C3H1 13.206 215-242
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 5.9e-09 343-428
no_ID  
HMMPanther PTHR24009 FAMILY 7e-188 2-433
HMMPanther PTHR24009:SF0 SUBFAMILY 7e-188 2-433
HMMPfam PF14259 RRM_6 2.9e-06 359-410
Seg seg seg NA 64-94
172-183
238-249
299-316
superfamily SSF54928 RNA-binding 4.9e-11 332-434
Wolf-PSORT
Lj3g3v3652410.2	nucl 11, cyto 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v3652410.2