Miyakogusa Predicted Gene

Lj3g3v3639960.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1LP24_SOYBN 623 89.0 95.5 (tr|I1LP24) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G64860.1 551 83.5 94.0 | Symbols: SIGA, SIG1, SIG2, SIGB, RPOD1 | sigma factor A | chr1:24098497-24100746 FORWARD LENGTH=502
Medicago Medtr0172s0030.1 607 88.2 94.9 | RNA polymerase sigma factor | HC | scaffold0172:25315-21123 | 20130731
Soybean Glyma12g01600.1 623 89.0 95.5  
LJGI gnl|LJGI|BP040921 771 100.0 100.0 similar to UniRef100_Q9SLX3 Cluster: Sigma factor; n=1; Nicotiana tabacum|Rep: Sigma factor - Nicotiana tabacum (Common tobacco), partial (25%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v3639960.1 length: 337 aa.
IPR000943 RNA polymerase sigma-70
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006352 DNA-dependent transcription, initiation    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0016987 sigma factor activity    
FPrintScan PR00046 SIGMA70FCT 5.5e-19 122-135
146-154
275-287
295-310
310-321
PatternScan PS00715 SIGMA70_1 NA 122-135
IPR007624 RNA polymerase sigma-70 region 3
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006352 DNA-dependent transcription, initiation    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0016987 sigma factor activity    
HMMPfam PF04539 Sigma70_r3 5.1e-11 177-245
IPR007627 RNA polymerase sigma-70 region 2
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006352 DNA-dependent transcription, initiation    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0016987 sigma factor activity    
HMMPfam PF04542 Sigma70_r2 1.9e-17 99-167
IPR007630 RNA polymerase sigma-70 region 4
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006352 DNA-dependent transcription, initiation    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0016987 sigma factor activity    
HMMPfam PF04545 Sigma70_r4 6.9e-11 274-323
IPR011991 Winged helix-turn-helix DNA-binding domain
Gene3D G3DSA:1.10.10.10 no description 3.3e-16 168-219
274-333
IPR013324 RNA polymerase sigma factor, region 3/4
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006352 DNA-dependent transcription, initiation    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0016987 sigma factor activity    
superfamily SSF88659 Sigma3 1.1e-08 256-327
169-226
IPR013325 RNA polymerase sigma factor, region 2
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006352 DNA-dependent transcription, initiation    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0016987 sigma factor activity    
superfamily SSF88946 Sigma2 4e-39 15-168
IPR014284 RNA polymerase sigma-70 like domain
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006352 DNA-dependent transcription, initiation    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0016987 sigma factor activity    
HMMTigr TIGR02937 sigma70-ECF: 7.3e-24 94-324
no_ID  
Gene3D G3DSA:1.10.601.10 no description 2e-33 89-167
HMMPanther PTHR30603 RNA 1.1e-98 7-337
Wolf-PSORT
Lj3g3v3639960.1	cyto 8, nucl 2, chlo 1, mito 1, cysk 1, golg 1, chlo_mito 1, nucl_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v3639960.1