Miyakogusa Predicted Gene

Lj3g3v3639420.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7JSU2_MEDTR 414 61.7 69.1 (tr|G7JSU2) Zinc finger CCCH domain-containing protein OS=Medicago truncatula GN=MTR_4g078160 PE=4 SV=1
TAIR_pep AT1G75340.1 207 43.3 58.5 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr1:28269153-28271873 REVERSE LENGTH=435
Medicago Medtr4g078160.1 414 61.7 69.1 | CCCH-type zinc finger protein, putative | HC | chr4:30090940-30084718 | 20130731
Soybean Glyma11g11630.2 410 64.8 73.4  
LJGI gnl|LJGI|TC82111 2010 100.0 100.0 similar to UniRef100_Q9FWS3 Cluster: F1B16.12 protein; n=1; Arabidopsis thaliana|Rep: F1B16.12 protein - Arabidopsis thaliana (Mouse-ear cress), partial (31%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v3639420.1 length: 338 aa.
IPR000571 Zinc finger, CCCH-type
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
Gene3D G3DSA:4.10.1000.10 no description 2.1e-07 3-29
HMMPfam PF00642 zf-CCCH 3.9e-08 3-23
HMMSmart SM00356 zinc 0.00015 1-25
ProfileScan PS50103 ZF_C3H1 14.277 4-26
IPR026290 Putative E3 ubiquitin-protein ligase, makorin-related
HMMPanther PTHR11224 MAKORIN-RELATED 2.5e-25 2-214
no_ID  
HMMPanther PTHR11224:SF24 SUBFAMILY 2.5e-25 2-214
Seg seg seg NA 48-56
Wolf-PSORT
Lj3g3v3639420.1	nucl 10, chlo 2, mito 2, chlo_mito 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v3639420.1