Miyakogusa Predicted Gene

Lj3g3v3557050.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr3

Full length sequence(45610869 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL K7LSM3_SOYBN 875 56.9 67.4 (tr|K7LSM3) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT2G32240.1 436 40.7 57.2 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05320.3); Has 470429 Blast hits to 168274 proteins in 4282 species: Archae - 6896; Bacteria - 131956; Metazoa - 175525; Fungi - 33166; Plants - 25441; Viruses - 2243; Other Eukaryotes - 95202 (source: NCBI BLink). | chr2:13684614-13689330 REVERSE LENGTH=1333

Medicago Medtr4g076030.1 806 63.5 73.3 | Uro-adherence factor A, putative | HC | chr4:29076152-29068419 | 20130731

Soybean Glyma11g10210.1 873 56.4 67.7

LJGI gnl|LJGI|TC70865 1477 99.6 99.6 weakly similar to UniRef100_A7R618 Cluster: Chromosome undetermined scaffold_1129, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_1129, whole genome shotgun sequence - Vitis vinifera (Grape), partial (12%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj3g3v3557050.1 length: 1267 aa.

IPR009053 Prefoldin

method AccNumber shortName E-value location

superfamily SSF46579 Prefoldin 0.014 623-731

no_ID

Coil coil coiled-coil NA 83-153
174-216
230-265
268-296
310-331
342-380
387-422
436-464
478-597
625-660
674-709
751-835
842-898
905-968
979-1084
1102-1137
1140-1182

Seg seg seg NA 92-104
179-190
223-245
286-298
503-519
537-557
901-916
1028-1040
1199-1233

Wolf-PSORT

Lj3g3v3557050.1 nucl 4, cyto 4, cyto_nucl 4, golg 2, cyto_pero 2, cyto_E.R. 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj3g3v3557050.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	K7LSM3_SOYBN	875	56.9	67.4	(tr\|K7LSM3) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT2G32240.1	436	40.7	57.2	\| Symbols: \| FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05320.3); Has 470429 Blast hits to 168274 proteins in 4282 species: Archae - 6896; Bacteria - 131956; Metazoa - 175525; Fungi - 33166; Plants - 25441; Viruses - 2243; Other Eukaryotes - 95202 (source: NCBI BLink). \| chr2:13684614-13689330 REVERSE LENGTH=1333
Medicago	Medtr4g076030.1	806	63.5	73.3	\| Uro-adherence factor A, putative \| HC \| chr4:29076152-29068419 \| 20130731
Soybean	Glyma11g10210.1	873	56.4	67.7
LJGI	gnl\|LJGI\|TC70865	1477	99.6	99.6	weakly similar to UniRef100_A7R618 Cluster: Chromosome undetermined scaffold_1129, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome undetermined scaffold_1129, whole genome shotgun sequence - Vitis vinifera (Grape), partial (12%)

IPR009053	Prefoldin
Lj3g3v3557050.1				length: 1267 aa.
method	AccNumber	shortName	E-value	location
superfamily	SSF46579	Prefoldin	0.014	623-731
no_ID
Coil	coil	coiled-coil	NA	83-153 174-216 230-265 268-296 310-331 342-380 387-422 436-464 478-597 625-660 674-709 751-835 842-898 905-968 979-1084 1102-1137 1140-1182
Seg	seg	seg	NA	92-104 179-190 223-245 286-298 503-519 537-557 901-916 1028-1040 1199-1233