| database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
|---|---|---|---|---|---|
| TrEMBL | G7JNJ6_MEDTR | 345 | 74.4 | 86.1 | (tr|G7JNJ6) RNA-binding protein OS=Medicago truncatula GN=MTR_4g074930 PE=4 SV=1 |
| TAIR_pep | AT3G18610.1 | 234 | 55.0 | 71.4 | | Symbols: PARLL1, ATNUC-L2, NUC-L2 | nucleolin like 2 | chr3:6404270-6407822 REVERSE LENGTH=636 |
| Medicago | Medtr4g074930.2 | 345 | 74.4 | 86.1 | | RNA recognition motif, a.k.a. RRM, RBD protein | HC | chr4:28567458-28562229 | 20130731 |
| Soybean | Glyma11g10790.1 | 321 | 71.7 | 83.0 | |
| LJGI | gnl|LJGI|TC76299 | 680 | 99.4 | 99.4 | similar to UniRef100_Q40363 Cluster: NuM1 protein; n=1; Medicago sativa|Rep: NuM1 protein - Medicago sativa (Alfalfa), partial (13%) |
| Lj3g3v3513520.1 | length: 310 aa. | |||
| IPR000504 | RNA recognition motif domain | |||
|---|---|---|---|---|
| method | AccNumber | shortName | E-value | location |
| Molecular Function | GO:0003676 | nucleic acid binding | ||
| HMMPfam | PF00076 | RRM_1 | 3.3e-10 | 57-125 173-229 |
| HMMSmart | SM00360 | RNA | 4.8e-13 | 56-127 156-232 |
| ProfileScan | PS50102 | RRM | 14.846 | 55-131 155-236 |
| IPR012677 | Nucleotide-binding, alpha-beta plait | |||
| Molecular Function | GO:0000166 | nucleotide binding | ||
| Gene3D | G3DSA:3.30.70.330 | no description | 2.6e-15 | 37-133 142-256 |
| no_ID | ||||
| HMMPanther | PTHR24012 | FAMILY | 2e-80 | 30-296 |
| HMMPanther | PTHR24012:SF9 | SUBFAMILY | 2e-80 | 30-296 |
| Seg | seg | seg | NA | 4-19 241-294 |
| superfamily | SSF54928 | RNA-binding | 9.1e-23 | 42-154 156-268 |
Lj3g3v3513520.1 nucl 13
| entry_id | prediction | score | sppta | spptna | fp | profile |
|---|---|---|---|---|---|---|
| Lj3g3v3513520.1 | Not targeted | -62.100 | -0.001 | -9.714 | 90.72% | -52.385 |