Miyakogusa Predicted Gene

Lj3g3v3440320.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3STN8_LOTJA 634 94.8 94.8 (tr|I3STN8) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT2G16780.1 424 62.3 74.5 | Symbols: MSI2, MSI02, NFC02, NFC2 | Transducin family protein / WD-40 repeat family protein | chr2:7281615-7283583 REVERSE LENGTH=415
Medicago Medtr4g073080.1 513 75.4 84.8 | nucleosome/chromatin assembly factor group protein | HC | chr4:27640107-27642823 | 20130731
Soybean Glyma12g03700.1 530 78.1 86.7  
LJGI gnl|LJGI|TC58231 1968 100.0 100.0 similar to UniRef100_A7P8B8 Cluster: Chromosome chr3 scaffold_8, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr3 scaffold_8, whole genome shotgun sequence - Vitis vinifera (Grape), partial (81%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v3440320.1 length: 329 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.015 79-114
127-163
170-206
212-250
270-306
HMMSmart SM00320 WD40 0.068 74-114
123-163
166-206
210-250
267-307
ProfileScan PS50082 WD_REPEATS_2 13.349 81-115
130-172
173-208
217-252
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 4.7e-52 37-309
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 31.191 81-316
superfamily SSF50978 WD40 1.1e-50 40-311
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 101-115
237-251
IPR020472 G-protein beta WD-40 repeat
FPrintScan PR00320 GPROTEINBRPT 7.9e-06 101-115
193-207
237-251
no_ID  
HMMPanther PTHR22850 WD40 2.6e-149 21-319
HMMPanther PTHR22850:SF27 RETINOBLASTOMA-BINDING 2.6e-149 21-319
Seg seg seg NA 255-269
Wolf-PSORT
Lj3g3v3440320.1	nucl 6, cyto 6, cyto_nucl 6
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v3440320.1