Miyakogusa Predicted Gene

Lj3g3v3376180.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL Q70I39_LOTJA 1676 98.4 98.4 (tr|Q70I39) Coatomer alpha subunit-like protein OS=Lotus japonicus PE=4 SV=1
TAIR_pep AT1G62020.1 1512 86.4 94.1 | Symbols: | Coatomer, alpha subunit | chr1:22919814-22923728 FORWARD LENGTH=1216
Medicago Medtr4g071130.1 1620 94.4 96.7 | coatomer subunit alpha-like protein | HC | chr4:26807943-26801111 | 20130731
Soybean Glyma12g04290.2 1637 94.7 97.2  
LJGI gnl|LJGI|TC75611 4857 100.0 100.0 UniRef100_Q70I39 Cluster: Coatomer alpha subunit-like protein; n=1; Lotus japonicus|Rep: Coatomer alpha subunit-like protein - Lotus japonicus, complete
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v3376180.1 length: 818 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 4.2e-07 44-79
84-121
126-163
196-231
242-276
HMMSmart SM00320 WD40 1.6e+02 2-37
40-79
82-121
124-163
193-232
237-276
279-317
ProfileScan PS50082 WD_REPEATS_2 15.087 47-88
89-130
131-164
200-241
244-285
IPR006692 Coatomer, WD associated region
Molecular Function GO:0005198 structural molecule activity    
Biological Process GO:0006886 intracellular protein transport    
Biological Process GO:0016192 vesicle-mediated transport    
Cellular Component GO:0030117 membrane coat    
HMMPfam PF04053 Coatomer_WDAD 4e-133 340-771
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 3.7e-84 519-549
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 52.229 5-326
superfamily SSF50978 WD40 1.8e-61 6-388
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 150-164
IPR020472 G-protein beta WD-40 repeat
FPrintScan PR00320 GPROTEINBRPT 1.3e-07 108-122
150-164
263-277
no_ID  
HMMPanther PTHR19876 COATOMER 0 1-818
HMMPanther PTHR19876:SF1 COATOMER 0 1-818
Seg seg seg NA 795-807
superfamily SSF82171 DPP6 1.7e-13 247-581
Wolf-PSORT
Lj3g3v3376180.1	chlo 5, nucl 4, chlo_mito 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v3376180.1