Miyakogusa Predicted Gene

Lj3g3v3363320.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr3

Full length sequence(45610869 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL B0BLH9_LOTJA 719 89.4 89.4 (tr|B0BLH9) CM0216.310.nc protein OS=Lotus japonicus GN=CM0216.310.nc PE=4 SV=1

TAIR_pep AT5G65960.1 400 55.9 68.8 | Symbols: | GTP binding | chr5:26385413-26387197 FORWARD LENGTH=393

Medicago Medtr8g073110.1 561 70.6 78.7 | GTP-binding protein | HC | chr8:30893902-30898038 | 20130731

Soybean Glyma09g32900.1 540 71.4 79.2

LJGI gnl|LJGI|BW626898 860 100.0 100.0 similar to UniRef100_A7PKU7 Cluster: Chromosome chr7 scaffold_20, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr7 scaffold_20, whole genome shotgun sequence - Vitis vinifera (Grape), partial (33%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj3g3v3363320.1 length: 395 aa.

IPR001806 Small GTPase superfamily

method AccNumber shortName E-value location

Molecular Function GO:0005525 GTP binding

Biological Process GO:0007264 small GTPase mediated signal transduction

HMMPfam PF00071 Ras 1e-07 19-156

IPR019341 Alpha/gamma-adaptin-binding protein p34

HMMPfam PF10199 Adaptin_binding 1.9e-24 217-388

IPR027417 P-loop containing nucleoside triphosphate hydrolase

superfamily SSF52540 P-loop 8.3e-11 14-147

no_ID

Gene3D G3DSA:3.40.50.300 no description 1.8e-12 178-204

Seg seg seg NA 250-266
345-357
381-392

Wolf-PSORT

Lj3g3v3363320.1 nucl 8, cyto 3, chlo 1, extr 1, vacu 1

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj3g3v3363320.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	B0BLH9_LOTJA	719	89.4	89.4	(tr\|B0BLH9) CM0216.310.nc protein OS=Lotus japonicus GN=CM0216.310.nc PE=4 SV=1
TAIR_pep	AT5G65960.1	400	55.9	68.8	\| Symbols: \| GTP binding \| chr5:26385413-26387197 FORWARD LENGTH=393
Medicago	Medtr8g073110.1	561	70.6	78.7	\| GTP-binding protein \| HC \| chr8:30893902-30898038 \| 20130731
Soybean	Glyma09g32900.1	540	71.4	79.2
LJGI	gnl\|LJGI\|BW626898	860	100.0	100.0	similar to UniRef100_A7PKU7 Cluster: Chromosome chr7 scaffold_20, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr7 scaffold_20, whole genome shotgun sequence - Vitis vinifera (Grape), partial (33%)

IPR001806	Small GTPase superfamily
Lj3g3v3363320.1				length: 395 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005525	GTP binding
Biological Process	GO:0007264	small GTPase mediated signal transduction
HMMPfam	PF00071	Ras	1e-07	19-156
IPR019341	Alpha/gamma-adaptin-binding protein p34
HMMPfam	PF10199	Adaptin_binding	1.9e-24	217-388
IPR027417	P-loop containing nucleoside triphosphate hydrolase
superfamily	SSF52540	P-loop	8.3e-11	14-147
no_ID
Gene3D	G3DSA:3.40.50.300	no description	1.8e-12	178-204
Seg	seg	seg	NA	250-266 345-357 381-392