Miyakogusa Predicted Gene
- Lj3g3v3360960.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr3
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
J3MHH8_ORYBR |
97.1 |
84.4 |
95.6 |
(tr|J3MHH8) Uncharacterized protein OS=Oryza brachyantha GN=OB06G34720 PE=4 SV=1 |
| TAIR_pep |
AT4G39220.1 |
90.5 |
95.5 |
97.7 |
| Symbols: ATRER1A | Rer1 family protein | chr4:18264280-18265531 FORWARD LENGTH=191 |
| Medicago |
Medtr4g070400.1 |
89.7 |
91.1 |
97.8 |
| ATRER1A | HC | chr4:26526416-26523268 | 20130731 |
| Soybean |
Glyma06g01400.1 |
89.4 |
91.1 |
95.6 |
|
| LJGI |
gnl|LJGI|TC75451 |
392 |
100.0 |
100.0 |
similar to UniRef100_A7P8Y5 Cluster: Chromosome chr3 scaffold_8, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr3 scaffold_8, whole genome shotgun sequence - Vitis vinifera (Grape), partial (98%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj3g3v3360960.1 |
length: 65 aa. |
| IPR004932 |
Retrieval of early ER protein Rer1 |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0016021 |
integral to membrane |
|
|
| HMMPanther |
PTHR10743 |
PROTEIN |
5.3e-40 |
1-63 |
| HMMPfam |
PF03248 |
Rer1 |
4.5e-26 |
1-52 |
| no_ID |
|
| Seg |
seg |
seg |
NA |
46-62 |
- Wolf-PSORT
Lj3g3v3360960.1 extr 5, chlo 3, nucl 2, cyto 2, E.R. 2, cyto_nucl 2, cyto_E.R. 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj3g3v3360960.1 |
|