Miyakogusa Predicted Gene

Lj3g3v3338580.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3SNX3_LOTJA 427 100.0 100.0 (tr|I3SNX3) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT3G18820.1 406 93.2 98.1 | Symbols: ATRABG3F, ATRAB7B, RAB71, RABG3F, RAB7B | RAB GTPase homolog G3F | chr3:6484266-6486005 FORWARD LENGTH=206
Medicago Medtr4g069850.1 413 96.1 99.0 | RAB GTPase-like protein A1D | HC | chr4:26276568-26272817 | 20130731
Soybean Glyma12g04830.1 422 98.5 99.5  
LJGI gnl|LJGI|TC61047 1231 100.0 100.0 UniRef100_Q40213 Cluster: RAB7C; n=1; Lotus japonicus|Rep: RAB7C - Lotus japonicus, complete
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v3338580.1 length: 206 aa.
IPR001806 Small GTPase superfamily
method AccNumber shortName E-value location
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0007264 small GTPase mediated signal transduction    
FPrintScan PR00449 RASTRNSFRMNG 1.4e-40 9-30
32-48
50-72
116-129
154-176
HMMPfam PF00071 Ras 1.4e-56 10-177
IPR002041 Ran GTPase
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006184 GTP catabolic process    
Biological Process GO:0006886 intracellular protein transport    
Biological Process GO:0006913 nucleocytoplasmic transport    
Biological Process GO:0007165 signal transduction    
HMMSmart SM00176 Ran 1.1e-05 14-201
IPR003578 Small GTPase superfamily, Rho type
Molecular Function GO:0005525 GTP binding    
Cellular Component GO:0005622 intracellular    
Biological Process GO:0007264 small GTPase mediated signal transduction    
HMMSmart SM00174 Rho 1.6e-13 11-179
IPR003579 Small GTPase superfamily, Rab type
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0007264 small GTPase mediated signal transduction    
Biological Process GO:0015031 protein transport    
HMMSmart SM00175 Rab 6e-95 9-179
IPR005225 Small GTP-binding protein domain
Molecular Function GO:0005525 GTP binding    
HMMTigr TIGR00231 small_GTP: 4.7e-27 9-172
IPR020849 Small GTPase superfamily, Ras type
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006184 GTP catabolic process    
Biological Process GO:0007165 signal transduction    
Cellular Component GO:0016020 membrane    
HMMSmart SM00173 Ras 3e-27 6-179
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 7e-61 4-188
no_ID  
Gene3D G3DSA:3.40.50.300 no description 2.6e-66 4-190
HMMPanther PTHR24073 FAMILY 1.6e-120 1-206
HMMPanther PTHR24073:SF57 SUBFAMILY 1.6e-120 1-206
ProfileScan PS51419 RAB 32.742 3-206
Wolf-PSORT
Lj3g3v3338580.1	chlo 14
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v3338580.1