| database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
|---|---|---|---|---|---|
| TrEMBL | G7JG42_MEDTR | 1147 | 66.9 | 75.8 | (tr|G7JG42) SWI/SNF complex subunit SMARCC1 OS=Medicago truncatula GN=MTR_4g069830 PE=4 SV=1 |
| TAIR_pep | AT4G34430.4 | 444 | 50.6 | 62.8 | | Symbols: CHB3, ATSWI3D | DNA-binding family protein | chr4:16461069-16464993 FORWARD LENGTH=986 |
| Medicago | Medtr4g069830.1 | 1147 | 66.9 | 75.8 | | SWI/SNF complex subunit SWI3D | HC | chr4:26258593-26267090 | 20130731 |
| Soybean | Glyma11g12640.1 | 1132 | 66.8 | 75.5 | |
| LJGI | gnl|LJGI|AV427373 | 779 | 100.0 | 100.0 | similar to UniRef100_Q8VY05-2 Cluster: Isoform 2 of Q8VY05 ; n=1; Arabidopsis thaliana|Rep: Isoform 2 of Q8VY05 - Arabidopsis thaliana (Mouse-ear cress), partial (4%) |
| Lj3g3v3338570.1 | length: 878 aa. | |||
| IPR000433 | Zinc finger, ZZ-type | |||
|---|---|---|---|---|
| method | AccNumber | shortName | E-value | location |
| Molecular Function | GO:0008270 | zinc ion binding | ||
| HMMPfam | PF00569 | ZZ | 3.7e-10 | 145-182 |
| HMMSmart | SM00291 | Zinc-binding | 8.8e-09 | 142-186 |
| PatternScan | PS01357 | ZF_ZZ_1 | NA | 148-174 |
| ProfileScan | PS50135 | ZF_ZZ_2 | 9.114 | 142-188 |
| IPR001005 | SANT/Myb domain | |||
| Molecular Function | GO:0003682 | chromatin binding | ||
| HMMPfam | PF00249 | Myb_DNA-binding | 9.2e-10 | 203-244 |
| HMMSmart | SM00717 | SANT | 1.3e-12 | 201-249 |
| IPR007526 | SWIRM domain | |||
| Molecular Function | GO:0005515 | protein binding | ||
| HMMPfam | PF04433 | SWIRM | 5.5e-10 | 1-68 |
| ProfileScan | PS50934 | SWIRM | 18.266 | 1-77 |
| IPR009057 | Homeodomain-like | |||
| Molecular Function | GO:0003677 | DNA binding | ||
| Gene3D | G3DSA:1.10.10.60 | no description | 3.4e-07 | 200-243 |
| superfamily | SSF46689 | Homeodomain-like | 2.8e-13 | 1-70 195-263 |
| IPR011991 | Winged helix-turn-helix DNA-binding domain | |||
| Gene3D | G3DSA:1.10.10.10 | no description | 3e-11 | 1-75 |
| IPR017884 | SANT domain | |||
| ProfileScan | PS51293 | SANT | 22.982 | 200-251 |
| no_ID | ||||
| HMMPanther | PTHR12802 | SWI/SNF | 1.6e-181 | 1-844 |
| HMMPanther | PTHR12802:SF4 | SWI/SNF | 1.6e-181 | 1-844 |
| Seg | seg | seg | NA | 209-219 250-261 565-580 717-736 |
Lj3g3v3338570.1 nucl 11, cyto 1, mito 1, vacu 1
| entry_id | prediction | score | sppta | spptna | fp | profile |
|---|---|---|---|---|---|---|
| Lj3g3v3338570.1 |