Miyakogusa Predicted Gene
- Lj3g3v3338400.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr3
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SMB5_LOTJA |
894 |
99.8 |
100.0 |
(tr|I3SMB5) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT1G19360.1 |
645 |
71.1 |
81.9 |
| Symbols: | Nucleotide-diphospho-sugar transferase family protein | chr1:6690672-6692211 REVERSE LENGTH=428 |
| Medicago |
Medtr4g069260.1 |
811 |
88.8 |
94.5 |
| nucleotide-diphospho-sugar transferase family protein | HC | chr4:26038635-26035340 | 20130731 |
| Soybean |
Glyma12g04930.1 |
812 |
89.0 |
93.6 |
|
| LJGI |
gnl|LJGI|TC62111 |
2581 |
100.0 |
100.0 |
similar to UniRef100_A7NTG5 Cluster: Chromosome chr18 scaffold_1, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_1, whole genome shotgun sequence - Vitis vinifera (Grape), partial (84%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj3g3v3338400.1 |
length: 434 aa. |
| IPR003388 |
Reticulon |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0005783 |
endoplasmic reticulum |
|
|
| HMMPanther |
PTHR10994 |
RETICULON |
2.1e-239 |
6-434 |
| IPR005069 |
Nucleotide-diphospho-sugar transferase |
| HMMPfam |
PF03407 |
Nucleotid_trans |
5.6e-58 |
191-412 |
| no_ID |
|
| Coil |
coil |
coiled-coil |
NA |
84-119 |
| HMMPanther |
PTHR10994:SF3 |
UNCHARACTERIZED |
2.1e-239 |
6-434 |
| superfamily |
SSF53448 |
Nucleotide-diphospho-sugar |
3.8e-08 |
167-365 |
- Wolf-PSORT
Lj3g3v3338400.1 cyto 5, E.R. 4, cyto_nucl 3.33333, cyto_plas 3.33333, chlo 2, vacu 1, pero 1, chlo_mito 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj3g3v3338400.1 |
|