Miyakogusa Predicted Gene

Lj3g3v3337450.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7LPC2_SOYBN 508 63.5 70.6 (tr|K7LPC2) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT4G34380.1 444 62.9 75.6 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr4:16438835-16440322 FORWARD LENGTH=495
Medicago Medtr4g068457.1 551 59.5 65.6 | transducin/WD40 repeat protein | HC | chr4:25703784-25702268 | 20130731
Soybean Glyma12g05170.1 475 54.3 60.9  
LJGI gnl|LJGI|TC58300 1287 97.2 97.2  
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v3337450.1 length: 1273 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 6.5e-07 138-164
247-275
281-317
377-409
417-466
HMMSmart SM00320 WD40 7.9e-05 127-164
165-202
237-276
279-318
327-366
372-409
415-467
ProfileScan PS50082 WD_REPEATS_2 8.771 244-285
286-317
379-409
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 7e-48 115-468
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 30.716 244-476
superfamily SSF50978 WD40 3.7e-49 126-467
no_ID  
HMMPanther PTHR22844 F-BOX 1.7e-65 127-526
Seg seg seg NA 12-22
65-90
105-124
252-265
292-310
435-445
528-540
596-608
613-624
630-648
718-746
768-793
836-865
877-908
932-964
971-995
1008-1030
1039-1066
1075-1100
1110-1127
1139-1168
1173-1188
1225-1264
Wolf-PSORT
Lj3g3v3337450.1	nucl 7, chlo 4, pero 2, chlo_mito 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v3337450.1