Miyakogusa Predicted Gene

Lj3g3v3302770.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7LPH0_SOYBN 429 93.5 96.8 (tr|K7LPH0) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT2G31450.2 355 74.7 87.6 | Symbols: ATNTH1 | DNA glycosylase superfamily protein | chr2:13401318-13404134 REVERSE LENGTH=377
Medicago Medtr4g067060.1 421 90.7 95.4 | EndoIII-related endonuclease | HC | chr4:25264796-25259617 | 20130731
Soybean Glyma11g13710.1 425 93.5 96.8  
LJGI gnl|LJGI|FS344849 642 98.0 98.0 similar to UniRef100_A7QM58 Cluster: Chromosome chr5 scaffold_124, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr5 scaffold_124, whole genome shotgun sequence - Vitis vinifera (Grape), partial (45%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v3302770.1 length: 236 aa.
IPR000445 Helix-hairpin-helix motif
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
HMMPfam PF00633 HHH 3.4e-09 98-126
IPR003265 HhH-GPD domain
Biological Process GO:0006284 base-excision repair    
HMMPfam PF00730 HhH-GPD 6.2e-21 32-170
HMMSmart SM00478 endonuclease 1.9e-51 36-192
IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif
Molecular Function GO:0004519 endonuclease activity    
Molecular Function GO:0051539 4 iron, 4 sulfur cluster binding    
HMMPfam PF10576 EndIII_4Fe-2S 0.00047 194-210
HMMSmart SM00525 no description 2.6e-06 193-213
IPR004035 Endonuclease III, iron-sulphur binding site
Molecular Function GO:0004519 endonuclease activity    
Biological Process GO:0006281 DNA repair    
PatternScan PS00764 ENDONUCLEASE_III_1 NA 194-210
IPR004036 Endonuclease III, conserved site-2
Molecular Function GO:0004519 endonuclease activity    
Biological Process GO:0006281 DNA repair    
PatternScan PS01155 ENDONUCLEASE_III_2 NA 101-130
IPR011257 DNA glycosylase
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0006281 DNA repair    
Gene3D G3DSA:1.10.340.30 no description 1.3e-32 23-122
superfamily SSF48150 DNA-glycosylase 1.8e-54 19-227
IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal
Gene3D G3DSA:1.10.1670.10 no description 8.4e-32 123-228
no_ID  
HMMPanther PTHR10359 A/G-SPECIFIC 2.4e-112 1-235
HMMPanther PTHR10359:SF16 ENDONUCLEASE 2.4e-112 1-235
Seg seg seg NA 218-236
Wolf-PSORT
Lj3g3v3302770.1	cyto 8, nucl 4, cyto_pero 4, cyto_E.R. 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v3302770.1