Miyakogusa Predicted Gene
- Lj3g3v3237860.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr3
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SIJ8_LOTJA |
285 |
99.3 |
100.0 |
(tr|I3SIJ8) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT5G15750.1 |
241 |
82.5 |
90.5 |
| Symbols: | Alpha-L RNA-binding motif/Ribosomal protein S4 family protein | chr5:5141449-5142701 FORWARD LENGTH=182 |
| Medicago |
Medtr8g102530.3 |
255 |
87.0 |
94.2 |
| U3 small nucleolar ribonucleoprotein IMP3 | HC | chr8:43168335-43171146 | 20130731 |
| Soybean |
Glyma20g30110.1 |
269 |
93.5 |
96.4 |
|
| LJGI |
gnl|LJGI|TC59538 |
799 |
99.3 |
99.3 |
similar to UniRef100_A7PAF2 Cluster: Chromosome chr14 scaffold_9, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_9, whole genome shotgun sequence - Vitis vinifera (Grape), complete |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj3g3v3237860.1 |
length: 140 aa. |
| IPR002942 |
RNA-binding S4 domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003723 |
RNA binding |
|
|
| Gene3D |
G3DSA:3.10.290.10 |
no description |
1.2e-07 |
65-124 |
| HMMPfam |
PF01479 |
S4 |
1e-11 |
65-111 |
| HMMSmart |
SM00363 |
S4 |
6.5e-08 |
65-128 |
| ProfileScan |
PS50889 |
S4 |
11.982 |
65-131 |
| IPR022801 |
Ribosomal protein S4/S9 |
| HMMPanther |
PTHR11831 |
30S |
1.4e-77 |
2-140 |
| no_ID |
|
| HMMPanther |
PTHR11831:SF1 |
U3 |
1.4e-77 |
2-140 |
| superfamily |
SSF55174 |
Alpha-L |
3.4e-14 |
1-133 |
- Wolf-PSORT
Lj3g3v3237860.1 cyto 4, plas 4, cyto_plas 4, nucl 2, mito 2, golg_plas 2, cyto_pero 2, cysk_plas 2, E.R._plas 2, cyto_E.R. 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj3g3v3237860.1 |
|