Miyakogusa Predicted Gene

Lj3g3v3236550.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3T2Y2_LOTJA 444 99.1 100.0 (tr|I3T2Y2) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT1G07410.1 399 88.0 95.4 | Symbols: ATRABA2B, RAB-A2B, ATRAB-A2B, RABA2b | RAB GTPase homolog A2B | chr1:2276270-2277154 FORWARD LENGTH=214
Medicago Medtr4g064897.1 427 96.3 97.7 | RAB GTPase-like protein A1D | HC | chr4:24249982-24247615 | 20130731
Soybean Glyma11g14360.1 427 94.9 97.2  
LJGI gnl|LJGI|TC60126 1291 100.0 100.0 UniRef100_Q40193 Cluster: Ras-related protein Rab11C; n=1; Lotus japonicus|Rep: Ras-related protein Rab11C - Lotus japonicus, complete
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v3236550.1 length: 216 aa.
IPR001806 Small GTPase superfamily
method AccNumber shortName E-value location
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0007264 small GTPase mediated signal transduction    
FPrintScan PR00449 RASTRNSFRMNG 1.3e-41 13-34
36-52
54-76
116-129
151-173
HMMPfam PF00071 Ras 4.9e-61 14-174
IPR002041 Ran GTPase
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006184 GTP catabolic process    
Biological Process GO:0006886 intracellular protein transport    
Biological Process GO:0006913 nucleocytoplasmic transport    
Biological Process GO:0007165 signal transduction    
HMMSmart SM00176 Ran 1.9e-08 18-216
IPR003578 Small GTPase superfamily, Rho type
Molecular Function GO:0005525 GTP binding    
Cellular Component GO:0005622 intracellular    
Biological Process GO:0007264 small GTPase mediated signal transduction    
HMMSmart SM00174 Rho 5e-11 15-172
IPR003579 Small GTPase superfamily, Rab type
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0007264 small GTPase mediated signal transduction    
Biological Process GO:0015031 protein transport    
HMMSmart SM00175 Rab 7.3e-113 13-176
IPR005225 Small GTP-binding protein domain
Molecular Function GO:0005525 GTP binding    
HMMTigr TIGR00231 small_GTP: 1.3e-40 11-170
IPR020849 Small GTPase superfamily, Ras type
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006184 GTP catabolic process    
Biological Process GO:0007165 signal transduction    
Cellular Component GO:0016020 membrane    
HMMSmart SM00173 Ras 9.4e-28 10-176
IPR024156 Small GTPase superfamily, ARF type
Molecular Function GO:0005525 GTP binding    
Cellular Component GO:0005622 intracellular    
Biological Process GO:0007264 small GTPase mediated signal transduction    
HMMSmart SM00177 ARF-like 0.0051 1-178
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 1.8e-65 8-214
no_ID  
Gene3D G3DSA:3.40.50.300 no description 4.8e-73 6-214
HMMPanther PTHR24073 FAMILY 2.1e-124 8-216
HMMPanther PTHR24073:SF87 SUBFAMILY 2.1e-124 8-216
ProfileScan PS51419 RAB 35.888 8-214
Wolf-PSORT
Lj3g3v3236550.1	cyto 6, chlo 4, nucl 1.5, cysk_nucl 1.5, plas 1, extr 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v3236550.1