Miyakogusa Predicted Gene

Lj3g3v3166220.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3T5B5_LOTJA 366 90.5 91.0 (tr|I3T5B5) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT5G59840.1 340 83.6 87.6 | Symbols: | Ras-related small GTP-binding family protein | chr5:24107450-24109049 REVERSE LENGTH=216
Medicago Medtr4g063160.2 339 83.2 86.6 | RAB GTPase-like protein A5B | HC | chr4:23386901-23382754 | 20130731
Soybean Glyma11g15120.1 352 86.0 89.0  
LJGI gnl|LJGI|TC57240 1279 100.0 100.0 UniRef100_Q40218 Cluster: RAB8D; n=1; Lotus japonicus|Rep: RAB8D - Lotus japonicus, complete
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v3166220.1 length: 214 aa.
IPR001806 Small GTPase superfamily
method AccNumber shortName E-value location
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0007264 small GTPase mediated signal transduction    
FPrintScan PR00449 RASTRNSFRMNG 7.3e-47 16-37
39-55
57-79
119-132
155-177
HMMPfam PF00071 Ras 1.8e-66 17-178
IPR002041 Ran GTPase
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006184 GTP catabolic process    
Biological Process GO:0006886 intracellular protein transport    
Biological Process GO:0006913 nucleocytoplasmic transport    
Biological Process GO:0007165 signal transduction    
HMMSmart SM00176 Ran 1e-06 21-212
IPR003578 Small GTPase superfamily, Rho type
Molecular Function GO:0005525 GTP binding    
Cellular Component GO:0005622 intracellular    
Biological Process GO:0007264 small GTPase mediated signal transduction    
HMMSmart SM00174 Rho 4.2e-14 18-180
IPR003579 Small GTPase superfamily, Rab type
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0007264 small GTPase mediated signal transduction    
Biological Process GO:0015031 protein transport    
HMMSmart SM00175 Rab 7.9e-107 16-180
IPR005225 Small GTP-binding protein domain
Molecular Function GO:0005525 GTP binding    
HMMTigr TIGR00231 small_GTP: 2.3e-31 14-170
IPR020849 Small GTPase superfamily, Ras type
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006184 GTP catabolic process    
Biological Process GO:0007165 signal transduction    
Cellular Component GO:0016020 membrane    
HMMSmart SM00173 Ras 1.1e-35 17-180
IPR024156 Small GTPase superfamily, ARF type
Molecular Function GO:0005525 GTP binding    
Cellular Component GO:0005622 intracellular    
Biological Process GO:0007264 small GTPase mediated signal transduction    
HMMSmart SM00177 ARF-like 0.0033 1-181
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 9.3e-71 11-213
no_ID  
Gene3D G3DSA:3.40.50.300 no description 3.4e-76 8-213
HMMPanther PTHR24073 FAMILY 1.1e-161 1-214
HMMPanther PTHR24073:SF56 SUBFAMILY 1.1e-161 1-214
ProfileScan PS51419 RAB 38.101 11-213
Seg seg seg NA 2-14
35-52
Wolf-PSORT
Lj3g3v3166220.1	cyto 8, chlo 3, nucl 1.5, chlo_mito 1.5, cysk_nucl 1.5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v3166220.1 Not targeted -39.745 0 -7.303 52.77% -32.442