Miyakogusa Predicted Gene

Lj3g3v3087300.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3SSH7_LOTJA 77.4 85.4 87.8 (tr|I3SSH7) DNA-directed RNA polymerase subunit OS=Lotus japonicus PE=3 SV=1
TAIR_pep AT4G07950.1 48.1 55.0 65.0 | Symbols: | DNA-directed RNA polymerase, subunit M, archaeal | chr4:4798910-4799510 FORWARD LENGTH=106
Medicago Medtr7g116750.1 59.3 62.5 77.5 | DNA-directed RNA polymerase subunit | LC | chr7:48211120-48208907 | 20130731
Soybean Glyma07g15730.1 64.7 70.0 80.0  
LJGI gnl|LJGI|TC66733 155 91.0 91.0 weakly similar to UniRef100_Q6EU09 Cluster: DNA-directed RNA polymerase subunit; n=1; Oryza sativa Japonica Group|Rep: DNA-directed RNA polymerase subunit - Oryza sativa subsp. japonica (Rice), partial (55%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v3087300.1 length: 58 aa.
IPR001222 Zinc finger, TFIIS-type
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Biological Process GO:0006351 transcription, DNA-dependent    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF01096 TFIIS_C 2.3e-16 18-57
HMMSmart SM00440 C2C2 3.1e-15 17-58
ProfileScan PS51133 ZF_TFIIS_2 12.857 15-57
no_ID  
Gene3D G3DSA:2.20.25.10 no description 2.7e-17 17-58
HMMPanther PTHR11239 DNA-DIRECTED 6.6e-13 17-58
Seg seg seg NA 3-17
superfamily SSF57783 Zinc 4.9e-13 17-58
Wolf-PSORT
Lj3g3v3087300.1	chlo 6, extr 5, nucl 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v3087300.1