Miyakogusa Predicted Gene

Lj3g3v3066900.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr3

Full length sequence(45610869 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1LTM3_SOYBN 999 89.3 94.5 (tr|I1LTM3) Uncharacterized protein OS=Glycine max PE=3 SV=1

TAIR_pep AT5G60790.1 923 81.6 91.0 | Symbols: ATGCN1, GCN1 | ABC transporter family protein | chr5:24453760-24455767 REVERSE LENGTH=595

Medicago Medtr2g095440.5 1003 89.5 94.5 | ABC transporter family protein | HC | chr2:40776820-40772637 | 20130731

Soybean Glyma12g30100.2 999 89.3 94.5

LJGI gnl|LJGI|GO025008 1376 99.1 99.1 homologue to UniRef100_A7PQT1 Cluster: Chromosome chr6 scaffold_25, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr6 scaffold_25, whole genome shotgun sequence - Vitis vinifera (Grape), partial (43%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj3g3v3066900.1 length: 540 aa.

IPR003439 ABC transporter-like

method AccNumber shortName E-value location

Molecular Function GO:0005524 ATP binding

Molecular Function GO:0016887 ATPase activity

HMMPfam PF00005 ABC_tran 4.7e-17 53-186
365-472

ProfileScan PS50893 ABC_TRANSPORTER_2 15.060 14-254
325-540

IPR003593 AAA+ ATPase domain

Molecular Function GO:0000166 nucleotide binding

Molecular Function GO:0017111 nucleoside-triphosphatase activity

HMMSmart SM00382 ATPases 2.2e-05 38-231
350-538

IPR017871 ABC transporter, conserved site

Molecular Function GO:0005524 ATP binding

Molecular Function GO:0016887 ATPase activity

PatternScan PS00211 ABC_TRANSPORTER_1 NA 158-172

IPR027417 P-loop containing nucleoside triphosphate hydrolase

superfamily SSF52540 P-loop 1.4e-40 325-518
19-240

no_ID

Gene3D G3DSA:3.40.50.300 no description 2e-39 15-272
323-527

HMMPanther PTHR19211 ATP-BINDING 0 9-535

HMMPanther PTHR19211:SF15 ATP-BINDING 0 9-535

HMMPfam PF12848 ABC_tran_2 1.7e-22 225-301

Seg seg seg NA 36-49

Wolf-PSORT

Lj3g3v3066900.1 cyto 14

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj3g3v3066900.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1LTM3_SOYBN	999	89.3	94.5	(tr\|I1LTM3) Uncharacterized protein OS=Glycine max PE=3 SV=1
TAIR_pep	AT5G60790.1	923	81.6	91.0	\| Symbols: ATGCN1, GCN1 \| ABC transporter family protein \| chr5:24453760-24455767 REVERSE LENGTH=595
Medicago	Medtr2g095440.5	1003	89.5	94.5	\| ABC transporter family protein \| HC \| chr2:40776820-40772637 \| 20130731
Soybean	Glyma12g30100.2	999	89.3	94.5
LJGI	gnl\|LJGI\|GO025008	1376	99.1	99.1	homologue to UniRef100_A7PQT1 Cluster: Chromosome chr6 scaffold_25, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr6 scaffold_25, whole genome shotgun sequence - Vitis vinifera (Grape), partial (43%)

IPR003439	ABC transporter-like
Lj3g3v3066900.1				length: 540 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005524	ATP binding
Molecular Function	GO:0016887	ATPase activity
HMMPfam	PF00005	ABC_tran	4.7e-17	53-186 365-472
ProfileScan	PS50893	ABC_TRANSPORTER_2	15.060	14-254 325-540
IPR003593	AAA+ ATPase domain
Molecular Function	GO:0000166	nucleotide binding
Molecular Function	GO:0017111	nucleoside-triphosphatase activity
HMMSmart	SM00382	ATPases	2.2e-05	38-231 350-538
IPR017871	ABC transporter, conserved site
Molecular Function	GO:0005524	ATP binding
Molecular Function	GO:0016887	ATPase activity
PatternScan	PS00211	ABC_TRANSPORTER_1	NA	158-172
IPR027417	P-loop containing nucleoside triphosphate hydrolase
superfamily	SSF52540	P-loop	1.4e-40	325-518 19-240
no_ID
Gene3D	G3DSA:3.40.50.300	no description	2e-39	15-272 323-527
HMMPanther	PTHR19211	ATP-BINDING	0	9-535
HMMPanther	PTHR19211:SF15	ATP-BINDING	0	9-535
HMMPfam	PF12848	ABC_tran_2	1.7e-22	225-301
Seg	seg	seg	NA	36-49