Miyakogusa Predicted Gene

Lj3g3v3033290.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL Q2PEZ1_TRIPR 1154 83.3 90.8 (tr|Q2PEZ1) DNA ligase (Fragment) OS=Trifolium pratense PE=2 SV=1
TAIR_pep AT1G08130.1 990 73.3 85.6 | Symbols: ATLIG1, LIG1 | DNA ligase 1 | chr1:2542913-2547815 REVERSE LENGTH=790
Medicago Medtr4g057345.1 1194 76.7 83.6 | DNA ligase I, ATP-dependent protein | HC | chr4:20998007-21005716 | 20130731
Soybean Glyma12g08600.1 1128 73.8 81.7  
LJGI gnl|LJGI|TC63847 864 100.0 100.0 similar to UniRef100_A7PQQ0 Cluster: Chromosome chr6 scaffold_25, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr6 scaffold_25, whole genome shotgun sequence - Vitis vinifera (Grape), partial (13%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v3033290.1 length: 776 aa.
IPR000977 DNA ligase, ATP-dependent
method AccNumber shortName E-value location
Molecular Function GO:0003910 DNA ligase (ATP) activity    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006260 DNA replication    
Biological Process GO:0006281 DNA repair    
Biological Process GO:0006310 DNA recombination    
HMMTigr TIGR00574 dnl1: 5.2e-153 220-759
IPR012308 DNA ligase, ATP-dependent, N-terminal
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003910 DNA ligase (ATP) activity    
Biological Process GO:0006281 DNA repair    
Biological Process GO:0006310 DNA recombination    
Gene3D G3DSA:1.10.3260.10 no description 2.1e-92 141-406
HMMPfam PF04675 DNA_ligase_A_N 2e-43 161-338
superfamily SSF117018 ATP-dependent 1.2e-81 136-395
IPR012309 DNA ligase, ATP-dependent, C-terminal
Molecular Function GO:0003910 DNA ligase (ATP) activity    
Biological Process GO:0006281 DNA repair    
Biological Process GO:0006310 DNA recombination    
HMMPfam PF04679 DNA_ligase_A_C 6.2e-23 633-744
IPR012310 DNA ligase, ATP-dependent, central
Molecular Function GO:0003910 DNA ligase (ATP) activity    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006281 DNA repair    
Biological Process GO:0006310 DNA recombination    
HMMPfam PF01068 DNA_ligase_A_M 3.9e-58 404-608
ProfileScan PS50160 DNA_LIGASE_A3 42.420 510-646
IPR012340 Nucleic acid-binding, OB-fold
Gene3D G3DSA:2.40.50.140 no description 8.5e-54 617-762
superfamily SSF50249 Nucleic 8.3e-51 616-763
IPR016059 DNA ligase, ATP-dependent, conserved site
Molecular Function GO:0003909 DNA ligase activity    
Biological Process GO:0051103 DNA ligation involved in DNA repair    
PatternScan PS00333 DNA_LIGASE_A2 NA 582-608
PatternScan PS00697 DNA_LIGASE_A1 NA 428-436
no_ID  
Coil coil coiled-coil NA 229-250
Gene3D G3DSA:3.30.1490.70 no description 5.8e-29 559-616
Gene3D G3DSA:3.30.470.30 no description 7.4e-40 434-557
HMMPanther PTHR10459 DNA 5.4e-262 98-776
HMMPanther PTHR10459:SF10 DNA 5.4e-262 98-776
Seg seg seg NA 50-91
765-776
superfamily SSF56091 DNA 5.6e-63 398-608
Wolf-PSORT
Lj3g3v3033290.1	chlo 13.5, chlo_mito 7.5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v3033290.1