Miyakogusa Predicted Gene

Lj3g3v3026760.5

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr3

Full length sequence(45610869 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1LRA9_SOYBN 1593 82.5 87.3 (tr|I1LRA9) Uncharacterized protein OS=Glycine max PE=4 SV=2

TAIR_pep AT2G27900.2 1159 63.0 74.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:11877654-11885238 FORWARD LENGTH=1124

Medicago Medtr4g056510.1 1562 81.9 86.1 | coiled-coil protein | HC | chr4:20718802-20736987 | 20130731

Soybean Glyma12g08830.1 1580 80.8 85.6

LJGI gnl|LJGI|TC69477 898 99.8 99.8 similar to UniRef100_A7PQN2 Cluster: Chromosome chr6 scaffold_25, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr6 scaffold_25, whole genome shotgun sequence - Vitis vinifera (Grape), partial (24%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj3g3v3026760.5 length: 933 aa.

IPR003309 Transcription regulator SCAN

method AccNumber shortName E-value location

Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity

Cellular Component GO:0005634 nucleus

Biological Process GO:0006355 regulation of transcription, DNA-dependent

ProfileScan PS50804 SCAN_BOX 8.538 665-705

IPR019514 Protein of unknown function DUF2451, C-terminal

HMMPfam PF10474 DUF2451 1e-71 717-931

IPR019515 Vacuolar protein sorting-associated protein 54

HMMPfam PF10475 DUF2450 1e-80 1-235

no_ID

HMMPanther PTHR13258 UNCHARACTERIZED 2.5e-241 1-933

Seg seg seg NA 276-301
359-375
645-659
683-692

Wolf-PSORT

Lj3g3v3026760.5 nucl 10, cyto 2, mito 1, cysk 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj3g3v3026760.5

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1LRA9_SOYBN	1593	82.5	87.3	(tr\|I1LRA9) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep	AT2G27900.2	1159	63.0	74.1	\| Symbols: \| CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). \| chr2:11877654-11885238 FORWARD LENGTH=1124
Medicago	Medtr4g056510.1	1562	81.9	86.1	\| coiled-coil protein \| HC \| chr4:20718802-20736987 \| 20130731
Soybean	Glyma12g08830.1	1580	80.8	85.6
LJGI	gnl\|LJGI\|TC69477	898	99.8	99.8	similar to UniRef100_A7PQN2 Cluster: Chromosome chr6 scaffold_25, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr6 scaffold_25, whole genome shotgun sequence - Vitis vinifera (Grape), partial (24%)

IPR003309	Transcription regulator SCAN
Lj3g3v3026760.5				length: 933 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003700	sequence-specific DNA binding transcription factor activity
Cellular Component	GO:0005634	nucleus
Biological Process	GO:0006355	regulation of transcription, DNA-dependent
ProfileScan	PS50804	SCAN_BOX	8.538	665-705
IPR019514	Protein of unknown function DUF2451, C-terminal
HMMPfam	PF10474	DUF2451	1e-71	717-931
IPR019515	Vacuolar protein sorting-associated protein 54
HMMPfam	PF10475	DUF2450	1e-80	1-235
no_ID
HMMPanther	PTHR13258	UNCHARACTERIZED	2.5e-241	1-933
Seg	seg	seg	NA	276-301 359-375 645-659 683-692