Miyakogusa Predicted Gene

Lj3g3v3006550.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr3

Full length sequence(45610869 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1LTR2_SOYBN 391 72.0 79.4 (tr|I1LTR2) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT5G42820.1 343 63.7 73.0 | Symbols: ATU2AF35B, U2AF35B | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr5:17170445-17171296 REVERSE LENGTH=283

Medicago Medtr2g084715.2 364 88.2 95.7 | splicing factor U2af small subunit A-like protein | HC | chr2:35927010-35930737 | 20130731

Soybean Glyma12g30590.2 391 72.0 79.4

LJGI gnl|LJGI|TC71172 1130 98.8 98.8 similar to UniRef100_Q99L29 Cluster: cDNA sequence BC003883; n=1; Mus musculus|Rep: cDNA sequence BC003883 - Mus musculus (Mouse), partial (60%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj3g3v3006550.1 length: 283 aa.

IPR000504 RNA recognition motif domain

method AccNumber shortName E-value location

Molecular Function GO:0003676 nucleic acid binding

ProfileScan PS50102 RRM 9.661 44-146

IPR000571 Zinc finger, CCCH-type

Molecular Function GO:0003676 nucleic acid binding

Molecular Function GO:0008270 zinc ion binding

HMMPfam PF00642 zf-CCCH 7e-07 14-37

HMMSmart SM00356 zinc 0.48 13-39
148-174

ProfileScan PS50103 ZF_C3H1 10.211 12-40
148-175

IPR009145 U2 auxiliary factor small subunit

Molecular Function GO:0003723 RNA binding

Cellular Component GO:0005634 nucleus

FPrintScan PR01848 U2AUXFACTOR 1.7e-60 18-37
37-57
75-90
103-125
130-154
165-177

HMMPanther PTHR12620 U2 7.9e-134 1-276

IPR012677 Nucleotide-binding, alpha-beta plait

Molecular Function GO:0000166 nucleotide binding

Gene3D G3DSA:3.30.70.330 no description 1.4e-20 44-145

no_ID

Coil coil coiled-coil NA 259-280

Seg seg seg NA 219-254

superfamily SSF54928 RNA-binding 8.6e-17 30-155

superfamily SSF90229 CCCH 0.006 146-174
10-39

Wolf-PSORT

Lj3g3v3006550.1 nucl 14

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj3g3v3006550.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1LTR2_SOYBN	391	72.0	79.4	(tr\|I1LTR2) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT5G42820.1	343	63.7	73.0	\| Symbols: ATU2AF35B, U2AF35B \| Zinc finger C-x8-C-x5-C-x3-H type family protein \| chr5:17170445-17171296 REVERSE LENGTH=283
Medicago	Medtr2g084715.2	364	88.2	95.7	\| splicing factor U2af small subunit A-like protein \| HC \| chr2:35927010-35930737 \| 20130731
Soybean	Glyma12g30590.2	391	72.0	79.4
LJGI	gnl\|LJGI\|TC71172	1130	98.8	98.8	similar to UniRef100_Q99L29 Cluster: cDNA sequence BC003883; n=1; Mus musculus\|Rep: cDNA sequence BC003883 - Mus musculus (Mouse), partial (60%)

IPR000504	RNA recognition motif domain
Lj3g3v3006550.1				length: 283 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003676	nucleic acid binding
ProfileScan	PS50102	RRM	9.661	44-146
IPR000571	Zinc finger, CCCH-type
Molecular Function	GO:0003676	nucleic acid binding
Molecular Function	GO:0008270	zinc ion binding
HMMPfam	PF00642	zf-CCCH	7e-07	14-37
HMMSmart	SM00356	zinc	0.48	13-39 148-174
ProfileScan	PS50103	ZF_C3H1	10.211	12-40 148-175
IPR009145	U2 auxiliary factor small subunit
Molecular Function	GO:0003723	RNA binding
Cellular Component	GO:0005634	nucleus
FPrintScan	PR01848	U2AUXFACTOR	1.7e-60	18-37 37-57 75-90 103-125 130-154 165-177
HMMPanther	PTHR12620	U2	7.9e-134	1-276
IPR012677	Nucleotide-binding, alpha-beta plait
Molecular Function	GO:0000166	nucleotide binding
Gene3D	G3DSA:3.30.70.330	no description	1.4e-20	44-145
no_ID
Coil	coil	coiled-coil	NA	259-280
Seg	seg	seg	NA	219-254
superfamily	SSF54928	RNA-binding	8.6e-17	30-155
superfamily	SSF90229	CCCH	0.006	146-174 10-39