Miyakogusa Predicted Gene

Lj3g3v2995970.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7JKW4_MEDTR 3956 84.9 90.8 (tr|G7JKW4) DNA polymerase OS=Medicago truncatula GN=MTR_4g054980 PE=3 SV=1
TAIR_pep AT1G08260.1 3197 71.0 82.3 | Symbols: EMB142, EMB2284, POL2A, TIL1, EMB529, ABO4, ESD7 | DNA polymerase epsilon catalytic subunit | chr1:2590944-2606892 FORWARD LENGTH=2161
Medicago Medtr4g054980.1 4007 86.7 92.7 | DNA polymerase epsilon catalytic subunit A | HC | chr4:19992779-19966992 | 20130731
Soybean Glyma11g36140.1 3771 81.2 87.3  
LJGI gnl|LJGI|CN825787 735 100.0 100.0 similar to UniRef100_A7PQF7 Cluster: DNA polymerase; n=1; Vitis vinifera|Rep: DNA polymerase - Vitis vinifera (Grape), partial (5%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v2995970.1 length: 2209 aa.
IPR006133 DNA-directed DNA polymerase, family B, exonuclease domain
method AccNumber shortName E-value location
Molecular Function GO:0003887 DNA-directed DNA polymerase activity    
Biological Process GO:0006260 DNA replication    
HMMPfam PF03104 DNA_pol_B_exo1 3.9e-72 74-401
IPR006134 DNA-directed DNA polymerase, family B, multifunctional domain
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003887 DNA-directed DNA polymerase activity    
Biological Process GO:0006260 DNA replication    
HMMPfam PF00136 DNA_pol_B 6.8e-21 597-1070
IPR006172 DNA-directed DNA polymerase, family B
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0003887 DNA-directed DNA polymerase activity    
Biological Process GO:0006139 nucleobase-containing compound metabolic process    
HMMSmart SM00486 DNA 2.6e-76 240-843
IPR012337 Ribonuclease H-like domain
Molecular Function GO:0003676 nucleic acid binding    
superfamily SSF53098 Ribonuclease 5.5e-81 63-486
IPR013697 DNA polymerase epsilon, catalytic subunit A, C-terminal
Molecular Function GO:0003887 DNA-directed DNA polymerase activity    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006260 DNA replication    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF08490 DUF1744 5.9e-126 1530-1899
no_ID  
Coil coil coiled-coil NA 566-587
Gene3D G3DSA:3.30.420.10 no description 7.2e-59 243-444
HMMPanther PTHR10670 DNA 0 1-2209
HMMPanther PTHR10670:SF0 DNA 0 1-2209
Seg seg seg NA 3-14
2008-2017
superfamily SSF56672 DNA/RNA 3.6e-95 470-1130
Wolf-PSORT
Lj3g3v2995970.1	nucl 9, cyto 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v2995970.1