Miyakogusa Predicted Gene
- Lj3g3v2926310.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr3
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1KFH1_SOYBN |
564 |
91.5 |
96.7 |
(tr|I1KFH1) Uncharacterized protein OS=Glycine max PE=4 SV=2 |
| TAIR_pep |
AT5G22010.1 |
501 |
79.1 |
91.1 |
| Symbols: AtRFC1, RFC1 | replication factor C1 | chr5:7280632-7287037 REVERSE LENGTH=956 |
| Medicago |
Medtr4g050180.1 |
561 |
87.7 |
94.0 |
| replication factor C1 | HC | chr4:17764475-17754850 | 20130731 |
| Soybean |
Glyma12g10230.1 |
563 |
88.9 |
94.0 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj3g3v2926310.1 |
length: 321 aa. |
| IPR008921 |
DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| Biological Process |
GO:0006260 |
DNA replication |
|
|
| superfamily |
SSF48019 |
DNA |
3.6e-44 |
126-274 |
| IPR010372 |
DNA polymerase III, delta |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| Molecular Function |
GO:0003887 |
DNA-directed DNA polymerase activity |
|
|
| Biological Process |
GO:0006260 |
DNA replication |
|
|
| Cellular Component |
GO:0009360 |
DNA polymerase III complex |
|
|
| HMMPfam |
PF06144 |
DNA_pol3_delta |
3.8e-05 |
29-101 |
| IPR013725 |
DNA replication factor RFC1, C-terminal |
| Molecular Function |
GO:0003689 |
DNA clamp loader activity |
|
|
| Molecular Function |
GO:0005524 |
ATP binding |
|
|
| Cellular Component |
GO:0005663 |
DNA replication factor C complex |
|
|
| Biological Process |
GO:0006260 |
DNA replication |
|
|
| HMMPfam |
PF08519 |
RFC1 |
5.3e-26 |
196-301 |
| IPR027417 |
P-loop containing nucleoside triphosphate hydrolase |
| superfamily |
SSF52540 |
P-loop |
2.2e-14 |
1-118 |
| no_ID |
|
| Gene3D |
G3DSA:1.10.8.60 |
no description |
3.4e-15 |
56-116 |
| Gene3D |
G3DSA:1.20.272.10 |
no description |
1.4e-39 |
128-237 |
| HMMPanther |
PTHR23389 |
CHROMOSOME |
5.8e-99 |
1-301 |
| HMMPanther |
PTHR23389:SF0 |
SUBFAMILY |
5.8e-99 |
1-301 |
- Wolf-PSORT
Lj3g3v2926310.1 cyto 7, nucl 3, cysk 2, chlo 1, extr 1, cysk_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj3g3v2926310.1 |
|