Miyakogusa Predicted Gene

Lj3g3v2923210.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7M2X2_SOYBN 311 68.6 82.7 (tr|K7M2X2) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G05120.1 270 59.5 74.5 | Symbols: | Helicase protein with RING/U-box domain | chr1:1471624-1476067 REVERSE LENGTH=833
Medicago Medtr4g049500.1 293 66.1 79.6 | RING/U-box helicase | HC | chr4:17406992-17415500 | 20130731
Soybean Glyma13g38580.1 311 68.6 82.7  
LJGI gnl|LJGI|TC60174 589 92.4 92.4 similar to UniRef100_A7PX42 Cluster: Chromosome chr12 scaffold_36, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr12 scaffold_36, whole genome shotgun sequence - Vitis vinifera (Grape), partial (12%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v2923210.1 length: 220 aa.
IPR000330 SNF2-related
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00176 SNF2_N 8.6e-09 6-91
IPR001841 Zinc finger, RING-type
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
HMMSmart SM00184 Ring 8.6e-06 115-154
ProfileScan PS50089 ZF_RING_2 11.914 115-155
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 3.9e-12 111-160
IPR017907 Zinc finger, RING-type, conserved site
PatternScan PS00518 ZF_RING_1 NA 130-139
no_ID  
HMMPanther PTHR10799 SWI/SNF-RELATED 1.5e-65 6-220
HMMPanther PTHR10799:SF62 DNA 1.5e-65 6-220
HMMPfam PF13923 zf-C3HC4_2 2.1e-08 112-155
superfamily SSF57850 RING/U-box 2.4e-12 78-161
Wolf-PSORT
Lj3g3v2923210.1	nucl 5, chlo 3, cyto 3, mito 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v2923210.1