- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1LU44_SOYBN |
343 |
52.0 |
63.7 |
(tr|I1LU44) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT1G05120.1 |
286 |
45.9 |
56.4 |
| Symbols: | Helicase protein with RING/U-box domain | chr1:1471624-1476067 REVERSE LENGTH=833 |
| Medicago |
Medtr4g049500.1 |
341 |
53.1 |
63.6 |
| RING/U-box helicase | HC | chr4:17406992-17415500 | 20130731 |
| Soybean |
Glyma12g31910.1 |
343 |
52.0 |
63.7 |
|
| LJGI |
gnl|LJGI|TC59140 |
1183 |
100.0 |
100.0 |
similar to UniRef100_A7PX42 Cluster: Chromosome chr12 scaffold_36, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr12 scaffold_36, whole genome shotgun sequence - Vitis vinifera (Grape), partial (18%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj3g3v2910770.1 |
length: 319 aa. |
| IPR000330 |
SNF2-related |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| Molecular Function |
GO:0005524 |
ATP binding |
|
|
| HMMPfam |
PF00176 |
SNF2_N |
9.9e-51 |
35-270 |
| IPR014001 |
Helicase, superfamily 1/2, ATP-binding domain |
| HMMSmart |
SM00487 |
DEAD-like |
5.4e-20 |
28-280 |
| ProfileScan |
PS51192 |
HELICASE_ATP_BIND_1 |
16.482 |
45-264 |
| IPR027417 |
P-loop containing nucleoside triphosphate hydrolase |
| superfamily |
SSF52540 |
P-loop |
1.4e-52 |
21-313 |
| no_ID |
|
| Gene3D |
G3DSA:3.40.50.300 |
no description |
4.4e-27 |
201-266 |
| HMMPanther |
PTHR10799 |
SWI/SNF-RELATED |
8.7e-92 |
19-267 |
| HMMPanther |
PTHR10799:SF62 |
DNA |
8.7e-92 |
19-267 |
- Wolf-PSORT
Lj3g3v2910770.1 cyto 10, nucl 1, mito 1, pero 1, cysk 1, cysk_nucl 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj3g3v2910770.1 |
|