Miyakogusa Predicted Gene

Lj3g3v2910770.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1LU44_SOYBN 343 52.0 63.7 (tr|I1LU44) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G05120.1 286 45.9 56.4 | Symbols: | Helicase protein with RING/U-box domain | chr1:1471624-1476067 REVERSE LENGTH=833
Medicago Medtr4g049500.1 341 53.1 63.6 | RING/U-box helicase | HC | chr4:17406992-17415500 | 20130731
Soybean Glyma12g31910.1 343 52.0 63.7  
LJGI gnl|LJGI|TC59140 1183 100.0 100.0 similar to UniRef100_A7PX42 Cluster: Chromosome chr12 scaffold_36, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr12 scaffold_36, whole genome shotgun sequence - Vitis vinifera (Grape), partial (18%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v2910770.1 length: 319 aa.
IPR000330 SNF2-related
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00176 SNF2_N 9.9e-51 35-270
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 5.4e-20 28-280
ProfileScan PS51192 HELICASE_ATP_BIND_1 16.482 45-264
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 1.4e-52 21-313
no_ID  
Gene3D G3DSA:3.40.50.300 no description 4.4e-27 201-266
HMMPanther PTHR10799 SWI/SNF-RELATED 8.7e-92 19-267
HMMPanther PTHR10799:SF62 DNA 8.7e-92 19-267
Wolf-PSORT
Lj3g3v2910770.1	cyto 10, nucl 1, mito 1, pero 1, cysk 1, cysk_nucl 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v2910770.1