Miyakogusa Predicted Gene

Lj3g3v2908390.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1KFD3_SOYBN 1362 74.6 82.3 (tr|I1KFD3) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT2G32415.1 1050 59.2 72.6 | Symbols: | Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain | chr2:13761307-13765421 REVERSE LENGTH=891
Medicago Medtr4g048230.1 1310 74.7 83.1 | 3'-5' exonuclease domain protein | HC | chr4:17080440-17072522 | 20130731
Soybean Glyma06g46220.1 1312 73.8 81.9  
LJGI gnl|LJGI|TC59925 1491 99.9 99.9 similar to UniRef100_A7PX27 Cluster: Chromosome chr12 scaffold_36, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr12 scaffold_36, whole genome shotgun sequence - Vitis vinifera (Grape), partial (21%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v2908390.1 length: 911 aa.
IPR002121 HRDC domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Cellular Component GO:0005622 intracellular    
HMMPfam PF00570 HRDC 3.6e-06 354-394
ProfileScan PS50967 HRDC 9.102 347-427
IPR002562 3'-5' exonuclease domain
Molecular Function GO:0003676 nucleic acid binding    
Biological Process GO:0006139 nucleobase-containing compound metabolic process    
Molecular Function GO:0008408 3'-5' exonuclease activity    
HMMPfam PF01612 DNA_pol_A_exo1 6e-47 116-283
HMMSmart SM00474 3'-5' 7.3e-42 116-284
IPR010997 HRDC-like
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0044237 cellular metabolic process    
superfamily SSF47819 HRDC-like 3.5e-11 328-454
IPR012337 Ribonuclease H-like domain
Molecular Function GO:0003676 nucleic acid binding    
superfamily SSF53098 Ribonuclease 1.5e-69 49-317
no_ID  
Gene3D G3DSA:3.30.420.10 no description 1.6e-12 115-286
HMMPanther PTHR12124 POLYMYOSITIS/SCLERODERMA 3.6e-164 45-729
HMMPanther PTHR12124:SF2 POLYMYOSITIS/SCLERODERMA 3.6e-164 45-729
Seg seg seg NA 10-29
412-421
Wolf-PSORT
Lj3g3v2908390.1	chlo 8, vacu 2, nucl 1, mito 1, plas 1, extr 1, nucl_plas 1, E.R._vacu 1, mito_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v2908390.1