Miyakogusa Predicted Gene
- Lj3g3v2888420.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr3
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1KF99_SOYBN |
875 |
78.5 |
86.0 |
(tr|I1KF99) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT3G22104.1 |
469 |
47.3 |
65.4 |
| Symbols: | Phototropic-responsive NPH3 family protein | chr3:7789814-7792179 FORWARD LENGTH=506 |
| Medicago |
Medtr4g045767.1 |
827 |
74.4 |
83.1 |
| phototropic-responsive NPH3 family protein | HC | chr4:15627351-15631291 | 20130731 |
| Soybean |
Glyma06g45770.1 |
875 |
78.5 |
86.0 |
|
| LJGI |
gnl|LJGI|AV766903 |
896 |
100.0 |
100.0 |
weakly similar to UniRef100_A7PXM1 Cluster: Chromosome chr12 scaffold_36, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr12 scaffold_36, whole genome shotgun sequence - Vitis vinifera (Grape), partial (27%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj3g3v2888420.1 |
length: 540 aa. |
| IPR000210 |
BTB/POZ-like |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMSmart |
SM00225 |
Broad-Complex, |
0.0031 |
5-106 |
| ProfileScan |
PS50097 |
BTB |
9.910 |
5-69 |
| IPR011333 |
BTB/POZ fold |
| Gene3D |
G3DSA:3.30.710.10 |
no description |
7.9e-05 |
4-104 |
| superfamily |
SSF54695 |
POZ |
6.3e-08 |
2-105 |
| IPR027356 |
NPH3 domain |
| HMMPfam |
PF03000 |
NPH3 |
1.1e-62 |
189-416 |
| ProfileScan |
PS51649 |
NPH3 |
69.488 |
189-440 |
| no_ID |
|
| HMMPanther |
PTHR32370 |
FAMILY |
5.4e-127 |
7-530 |
| HMMPanther |
PTHR32370:SF0 |
SUBFAMILY |
5.4e-127 |
7-530 |
| Seg |
seg |
seg |
NA |
427-447 |
- Wolf-PSORT
Lj3g3v2888420.1 nucl 4.5, chlo 3, cysk_nucl 3, plas 2, chlo_mito 2, cyto 1, mito 1, vacu 1, E.R. 1, golg_plas 1, E.R._vacu 1, cyto_E.R. 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj3g3v2888420.1 |
|