Miyakogusa Predicted Gene

Lj3g3v2807960.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7LW22_SOYBN 1747 83.3 87.0 (tr|K7LW22) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT4G03430.1 1454 69.7 78.8 | Symbols: STA1, EMB2770 | pre-mRNA splicing factor-related | chr4:1517411-1520500 REVERSE LENGTH=1029
Medicago Medtr7g068630.1 1656 79.2 83.6 | pre-mRNA splicing factor-like protein | HC | chr7:25167319-25162067 | 20130731
Soybean Glyma13g37420.1 1719 82.1 86.0  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v2807960.1 length: 1037 aa.
IPR000626 Ubiquitin
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMSmart SM00213 Ubiquitin 0.0098 1-76
IPR003107 RNA-processing protein, HAT helix
Cellular Component GO:0005622 intracellular    
Biological Process GO:0006396 RNA processing    
HMMSmart SM00386 HAT 2.7 360-392
394-426
455-487
515-547
625-659
695-727
729-760
762-794
810-842
844-876
878-910
942-974
IPR010491 PRP1 splicing factor, N-terminal
Biological Process GO:0000398 mRNA splicing, via spliceosome    
Cellular Component GO:0005634 nucleus    
HMMPfam PF06424 PRP1_N 1.1e-43 98-249
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 2.2e-16 359-557
575-800
808-1014
IPR013026 Tetratricopeptide repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50293 TPR_REGION 9.934 796-897
IPR019955 Ubiquitin supergroup
ProfileScan PS50053 UBIQUITIN_2 11.486 20-80
IPR027108 Pre-mRNA-processing factor 6/Prp1
HMMPanther PTHR11246:SF1 PRE-MRNA 0 74-1028
no_ID  
Gene3D G3DSA:3.10.20.90 no description 5e-08 3-75
HMMPanther PTHR11246 PRE-MRNA 0 74-1028
Seg seg seg NA 39-52
130-162
178-191
197-215
257-264
superfamily SSF48452 TPR-like 0.017 746-967
361-540
471-640
601-748
932-1036
superfamily SSF54236 Ubiquitin-like 1.2e-10 2-84
Wolf-PSORT
Lj3g3v2807960.1	cyto 10, chlo 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v2807960.1