Miyakogusa Predicted Gene

Lj3g3v2733950.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr3

Full length sequence(45610869 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL G7L846_MEDTR 550 85.8 91.5 (tr|G7L846) Protein phosphatase 1 regulatory subunit OS=Medicago truncatula GN=MTR_8g102770 PE=4 SV=1

TAIR_pep AT5G19680.1 490 74.1 84.8 | Symbols: | Leucine-rich repeat (LRR) family protein | chr5:6649663-6651564 FORWARD LENGTH=328

Medicago Medtr8g102770.2 551 85.8 91.5 | protein phosphatase 1 regulatory subunit 7 | HC | chr8:43263427-43268241 | 20130731

Soybean Glyma08g03880.1 545 81.7 90.2

LJGI gnl|LJGI|TC72061 805 100.0 100.0 similar to UniRef100_A7PEI6 Cluster: Chromosome chr11 scaffold_13, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr11 scaffold_13, whole genome shotgun sequence - Vitis vinifera (Grape), partial (35%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj3g3v2733950.1 length: 357 aa.

IPR001611 Leucine-rich repeat

method AccNumber shortName E-value location

Molecular Function GO:0005515 protein binding

ProfileScan PS51450 LRR 5.556 67-89
90-113
117-138
139-160
162-183
184-205
206-226
227-248
249-270
271-292
293-314
320-341

IPR003591 Leucine-rich repeat, typical subtype

HMMSmart SM00369 Leucine-rich 8 66-88
115-139
204-227
269-290
291-316

IPR025875 Leucine rich repeat 4

HMMPfam PF12799 LRR_4 3.9e-07 66-103
117-158
250-290
292-337

no_ID

FPrintScan PR00019 LEURICHRPT 2.3e-05 68-81
269-282

Gene3D G3DSA:3.80.10.10 no description 3.4e-34 40-202
203-339

HMMPanther PTHR10588 FAMILY 2.3e-59 94-353

HMMPanther PTHR10588:SF96 PROTEIN 2.3e-59 94-353

HMMSmart SM00364 Leucine-rich 1e+02 65-85
115-134
269-288

HMMSmart SM00365 Leucine-rich 7.8e+02 65-90
115-136
137-158
160-181
182-203
204-224
225-246
247-268
269-290
291-312
318-339

superfamily SSF52058 L 4.7e-50 1-352

Wolf-PSORT

Lj3g3v2733950.1 chlo 6.5, chlo_mito 4.5, nucl 4, plas 2, cyto_nucl 2, cysk_nucl 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj3g3v2733950.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	G7L846_MEDTR	550	85.8	91.5	(tr\|G7L846) Protein phosphatase 1 regulatory subunit OS=Medicago truncatula GN=MTR_8g102770 PE=4 SV=1
TAIR_pep	AT5G19680.1	490	74.1	84.8	\| Symbols: \| Leucine-rich repeat (LRR) family protein \| chr5:6649663-6651564 FORWARD LENGTH=328
Medicago	Medtr8g102770.2	551	85.8	91.5	\| protein phosphatase 1 regulatory subunit 7 \| HC \| chr8:43263427-43268241 \| 20130731
Soybean	Glyma08g03880.1	545	81.7	90.2
LJGI	gnl\|LJGI\|TC72061	805	100.0	100.0	similar to UniRef100_A7PEI6 Cluster: Chromosome chr11 scaffold_13, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr11 scaffold_13, whole genome shotgun sequence - Vitis vinifera (Grape), partial (35%)

IPR001611	Leucine-rich repeat
Lj3g3v2733950.1				length: 357 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005515	protein binding
ProfileScan	PS51450	LRR	5.556	67-89 90-113 117-138 139-160 162-183 184-205 206-226 227-248 249-270 271-292 293-314 320-341
IPR003591	Leucine-rich repeat, typical subtype
HMMSmart	SM00369	Leucine-rich	8	66-88 115-139 204-227 269-290 291-316
IPR025875	Leucine rich repeat 4
HMMPfam	PF12799	LRR_4	3.9e-07	66-103 117-158 250-290 292-337
no_ID
FPrintScan	PR00019	LEURICHRPT	2.3e-05	68-81 269-282
Gene3D	G3DSA:3.80.10.10	no description	3.4e-34	40-202 203-339
HMMPanther	PTHR10588	FAMILY	2.3e-59	94-353
HMMPanther	PTHR10588:SF96	PROTEIN	2.3e-59	94-353
HMMSmart	SM00364	Leucine-rich	1e+02	65-85 115-134 269-288
HMMSmart	SM00365	Leucine-rich	7.8e+02	65-90 115-136 137-158 160-181 182-203 204-224 225-246 247-268 269-290 291-312 318-339
superfamily	SSF52058	L	4.7e-50	1-352