Miyakogusa Predicted Gene

Lj3g3v2722600.3

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr3

Full length sequence(45610869 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL K7KCC8_SOYBN 854 76.5 84.1 (tr|K7KCC8) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT2G45540.1 652 61.7 75.4 | Symbols: | WD-40 repeat family protein / beige-related | chr2:18757881-18772229 REVERSE LENGTH=2946

Medicago Medtr8g035750.1 810 75.7 82.7 | WD-40 repeat protein/beige protein | HC | chr8:13037122-13066469 | 20130731

Soybean Glyma07g09140.1 221 60.6 67.5

LJGI gnl|LJGI|BP056129 367 99.5 99.5 similar to UniRef100_Q0JB56 Cluster: Os04g0555500 protein; n=1; Oryza sativa Japonica Group|Rep: Os04g0555500 protein - Oryza sativa subsp. japonica (Rice), partial (11%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj3g3v2722600.3 length: 542 aa.

IPR000409 BEACH domain

method AccNumber shortName E-value location

Gene3D G3DSA:1.10.1540.10 no description 4.3e-32 1-80

HMMPfam PF02138 Beach 4e-24 2-81

HMMSmart SM01026 Beige/BEACH 8.4e-06 1-81

ProfileScan PS50197 BEACH 35.401 1-81

superfamily SSF81837 BEACH 3.2e-30 1-81

IPR001680 WD40 repeat

Molecular Function GO:0005515 protein binding

HMMPfam PF00400 WD40 0.014 236-266
313-340

HMMSmart SM00320 WD40 5.3 228-267
310-349
474-514

ProfileScan PS50082 WD_REPEATS_2 12.280 235-270

IPR015943 WD40/YVTN repeat-like-containing domain

Molecular Function GO:0005515 protein binding

Gene3D G3DSA:2.130.10.10 no description 4.4e-27 464-513

IPR017986 WD40-repeat-containing domain

Molecular Function GO:0005515 protein binding

ProfileScan PS50294 WD_REPEATS_REGION 12.025 208-276

superfamily SSF50978 WD40 1.4e-24 166-518

no_ID

HMMPanther PTHR13743 BEIGE/BEACH-RELATED 1.1e-159 92-536

HMMPanther PTHR13743:SF36 PREDICTED: 1.1e-159 92-536

Seg seg seg NA 270-298
346-359

Wolf-PSORT

Lj3g3v2722600.3 nucl 9, cyto 4

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj3g3v2722600.3

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	K7KCC8_SOYBN	854	76.5	84.1	(tr\|K7KCC8) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT2G45540.1	652	61.7	75.4	\| Symbols: \| WD-40 repeat family protein / beige-related \| chr2:18757881-18772229 REVERSE LENGTH=2946
Medicago	Medtr8g035750.1	810	75.7	82.7	\| WD-40 repeat protein/beige protein \| HC \| chr8:13037122-13066469 \| 20130731
Soybean	Glyma07g09140.1	221	60.6	67.5
LJGI	gnl\|LJGI\|BP056129	367	99.5	99.5	similar to UniRef100_Q0JB56 Cluster: Os04g0555500 protein; n=1; Oryza sativa Japonica Group\|Rep: Os04g0555500 protein - Oryza sativa subsp. japonica (Rice), partial (11%)

IPR000409	BEACH domain
Lj3g3v2722600.3				length: 542 aa.
method	AccNumber	shortName	E-value	location
Gene3D	G3DSA:1.10.1540.10	no description	4.3e-32	1-80
HMMPfam	PF02138	Beach	4e-24	2-81
HMMSmart	SM01026	Beige/BEACH	8.4e-06	1-81
ProfileScan	PS50197	BEACH	35.401	1-81
superfamily	SSF81837	BEACH	3.2e-30	1-81
IPR001680	WD40 repeat
Molecular Function	GO:0005515	protein binding
HMMPfam	PF00400	WD40	0.014	236-266 313-340
HMMSmart	SM00320	WD40	5.3	228-267 310-349 474-514
ProfileScan	PS50082	WD_REPEATS_2	12.280	235-270
IPR015943	WD40/YVTN repeat-like-containing domain
Molecular Function	GO:0005515	protein binding
Gene3D	G3DSA:2.130.10.10	no description	4.4e-27	464-513
IPR017986	WD40-repeat-containing domain
Molecular Function	GO:0005515	protein binding
ProfileScan	PS50294	WD_REPEATS_REGION	12.025	208-276
superfamily	SSF50978	WD40	1.4e-24	166-518
no_ID
HMMPanther	PTHR13743	BEIGE/BEACH-RELATED	1.1e-159	92-536
HMMPanther	PTHR13743:SF36	PREDICTED:	1.1e-159	92-536
Seg	seg	seg	NA	270-298 346-359