Miyakogusa Predicted Gene
- Lj3g3v2718810.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr3
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7IHW5_MEDTR |
485 |
87.2 |
92.9 |
(tr|G7IHW5) 23S rRNA (Uracil-5-)-methyltransferase rumA OS=Medicago truncatula GN=MTR_2g100500 PE=4 SV=1 |
| TAIR_pep |
AT3G21300.1 |
430 |
80.1 |
88.0 |
| Symbols: | RNA methyltransferase family protein | chr3:7493654-7496257 REVERSE LENGTH=554 |
| Medicago |
Medtr2g100500.1 |
485 |
87.2 |
92.9 |
| 23S rRNA (uracil-5)-methyltransferase RumA | HC | chr2:43200585-43193800 | 20130731 |
| Soybean |
Glyma13g42890.1 |
479 |
86.1 |
91.4 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj3g3v2718810.1 |
length: 267 aa. |
| IPR001566 |
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003723 |
RNA binding |
|
|
| Biological Process |
GO:0006396 |
RNA processing |
|
|
| Molecular Function |
GO:0008173 |
RNA methyltransferase activity |
|
|
| HMMTigr |
TIGR00479 |
rumA: |
3.4e-62 |
33-259 |
| IPR010280 |
(Uracil-5)-methyltransferase |
| Biological Process |
GO:0006396 |
RNA processing |
|
|
| Molecular Function |
GO:0008173 |
RNA methyltransferase activity |
|
|
| HMMPfam |
PF05958 |
tRNA_U5-meth_tr |
3.2e-18 |
76-265 |
| PatternScan |
PS01231 |
TRMA_2 |
NA |
249-259 |
| no_ID |
|
| Gene3D |
G3DSA:3.40.50.150 |
no description |
9.4e-66 |
52-265 |
| HMMPanther |
PTHR11061 |
RNA |
9.8e-118 |
1-265 |
| HMMPanther |
PTHR11061:SF21 |
TRNA |
9.8e-118 |
1-265 |
| Seg |
seg |
seg |
NA |
47-59 |
| superfamily |
SSF53335 |
S-adenosyl-L-methionine-dependent |
7.8e-56 |
14-263 |
- Wolf-PSORT
Lj3g3v2718810.1 cyto 6, chlo 4, cysk 2, chlo_mito 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj3g3v2718810.1 |
|