Miyakogusa Predicted Gene
- Lj3g3v2666480.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr3
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
Q9MAZ9_SOYBN |
323 |
88.3 |
91.1 |
(tr|Q9MAZ9) Nonclathrin coat protein zeta1-COP OS=Glycine max GN=copz1 PE=2 SV=1 |
| TAIR_pep |
AT1G60970.1 |
250 |
71.1 |
82.7 |
| Symbols: | SNARE-like superfamily protein | chr1:22448008-22449387 REVERSE LENGTH=177 |
| Medicago |
Medtr8g017630.1 |
310 |
84.4 |
89.9 |
| nonclathrin coat protein zeta1-COP | HC | chr8:6034186-6037629 | 20130731 |
| Soybean |
Glyma08g20370.1 |
323 |
88.3 |
91.1 |
|
| LJGI |
gnl|LJGI|TC59095 |
1076 |
100.0 |
100.0 |
homologue to UniRef100_Q9MAZ9 Cluster: Nonclathrin coat protein zeta1-COP; n=1; Glycine max|Rep: Nonclathrin coat protein zeta1-COP - Glycine max (Soybean), complete |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj3g3v2666480.1 |
length: 180 aa. |
| IPR011012 |
Longin-like domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Biological Process |
GO:0006810 |
transport |
|
|
| superfamily |
SSF64356 |
SNARE-like |
4.1e-30 |
9-154 |
| IPR022775 |
AP complex, mu/sigma subunit |
| HMMPfam |
PF01217 |
Clat_adaptor_s |
8.3e-22 |
10-149 |
| no_ID |
|
| Gene3D |
G3DSA:3.30.450.60 |
no description |
1.4e-20 |
10-150 |
| HMMPanther |
PTHR11043 |
ZETA-COAT |
3.5e-81 |
1-180 |
| HMMPanther |
PTHR11043:SF0 |
SUBFAMILY |
3.5e-81 |
1-180 |
| Seg |
seg |
seg |
NA |
116-129 |
- Wolf-PSORT
Lj3g3v2666480.1 chlo 7, nucl 2, cyto 2, plas 2, cyto_nucl 2, nucl_plas 2, cyto_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj3g3v2666480.1 |
|