Miyakogusa Predicted Gene
- Lj3g3v2520120.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr3
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1KHL9_SOYBN |
385 |
79.4 |
86.8 |
(tr|I1KHL9) Uncharacterized protein OS=Glycine max PE=4 SV=2 |
| TAIR_pep |
AT5G54130.4 |
287 |
66.4 |
78.7 |
| Symbols: | Calcium-binding endonuclease/exonuclease/phosphatase family | chr5:21962900-21964841 FORWARD LENGTH=351 |
| Medicago |
Medtr8g023830.1 |
360 |
78.9 |
85.4 |
| endonuclease/exonuclease/phosphatase family protein | HC | chr8:8682819-8687402 | 20130731 |
| Soybean |
Glyma07g05340.1 |
384 |
79.3 |
86.8 |
|
| LJGI |
gnl|LJGI|TC64191 |
1431 |
100.0 |
100.0 |
similar to UniRef100_A7QET7 Cluster: Chromosome chr16 scaffold_86, whole genome shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome chr16 scaffold_86, whole genome shotgun sequence - Vitis vinifera (Grape), partial (44%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj3g3v2520120.1 |
length: 241 aa. |
| IPR005135 |
Endonuclease/exonuclease/phosphatase |
| method |
AccNumber |
shortName |
E-value |
location |
| Gene3D |
G3DSA:3.60.10.10 |
no description |
4.2e-06 |
55-241 |
| HMMPfam |
PF03372 |
Exo_endo_phos |
3.4e-06 |
57-241 |
| superfamily |
SSF56219 |
DNase |
2.7e-16 |
53-241 |
| no_ID |
|
| HMMPanther |
PTHR12121 |
CARBON |
4.8e-50 |
47-241 |
| HMMPanther |
PTHR12121:SF15 |
SUBFAMILY |
4.8e-50 |
47-241 |
- Wolf-PSORT
Lj3g3v2520120.1 chlo 5, nucl 4, mito 2, pero 2, cyto_nucl 2, cysk_nucl 2, nucl_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj3g3v2520120.1 |
|