Miyakogusa Predicted Gene
- Lj3g3v2484120.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr3
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7MEQ9_SOYBN |
383 |
72.1 |
78.5 |
(tr|K7MEQ9) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT2G46780.1 |
236 |
55.7 |
65.9 |
| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:19229516-19231043 FORWARD LENGTH=336 |
| Medicago |
Medtr8g024520.2 |
358 |
67.8 |
75.2 |
| RNA-binding (RRM/RBD/RNP motif) family protein | HC | chr8:9035953-9039164 | 20130731 |
| Soybean |
Glyma07g05670.1 |
370 |
69.6 |
75.9 |
|
| LJGI |
gnl|LJGI|TC80300 |
955 |
100.0 |
100.0 |
similar to UniRef100_A7PXT1 Cluster: Chromosome chr15 scaffold_37, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr15 scaffold_37, whole genome shotgun sequence - Vitis vinifera (Grape), partial (33%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj3g3v2484120.1 |
length: 280 aa. |
| IPR000504 |
RNA recognition motif domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003676 |
nucleic acid binding |
|
|
| HMMPfam |
PF00076 |
RRM_1 |
8.1e-19 |
24-81 |
| HMMSmart |
SM00360 |
RNA |
2.3e-25 |
23-95 |
| ProfileScan |
PS50102 |
RRM |
17.268 |
22-99 |
| IPR012677 |
Nucleotide-binding, alpha-beta plait |
| Molecular Function |
GO:0000166 |
nucleotide binding |
|
|
| Gene3D |
G3DSA:3.30.70.330 |
no description |
3.2e-25 |
15-98 |
| no_ID |
|
| HMMPanther |
PTHR24011 |
FAMILY |
1.5e-69 |
16-267 |
| HMMPanther |
PTHR24011:SF87 |
SUBFAMILY |
1.5e-69 |
16-267 |
| Seg |
seg |
seg |
NA |
235-254 |
| superfamily |
SSF54928 |
RNA-binding |
3.3e-24 |
22-98 |
- Wolf-PSORT
Lj3g3v2484120.1 chlo 6, nucl 4, cyto 1, mito 1, extr 1, E.R. 1, cyto_E.R. 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj3g3v2484120.1 |
|