Miyakogusa Predicted Gene

Lj3g3v2477640.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I7GUC2_LOTJA 2103 81.6 89.0 (tr|I7GUC2) ATP-binding cassette protein OS=Lotus japonicus GN=ABCB PE=2 SV=1
TAIR_pep AT1G02520.1 1748 68.5 81.9 | Symbols: PGP11 | P-glycoprotein 11 | chr1:524134-528745 FORWARD LENGTH=1278
Medicago Medtr1g086080.2 1967 78.3 87.1 | ABC transporter B family protein | HC | chr1:38528582-38521884 | 20130731
Soybean Glyma03g38300.1 2038 79.5 87.4  
LJGI gnl|LJGI|GO036110 954 92.4 92.4 similar to UniRef100_A7Q0Z8 Cluster: Chromosome chr7 scaffold_42, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr7 scaffold_42, whole genome shotgun sequence - Vitis vinifera (Grape), partial (17%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v2477640.1 length: 1267 aa.
IPR001140 ABC transporter, transmembrane domain
method AccNumber shortName E-value location
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006810 transport    
Cellular Component GO:0016021 integral to membrane    
Molecular Function GO:0042626 ATPase activity, coupled to transmembrane movement of substances    
Biological Process GO:0055085 transmembrane transport    
HMMPfam PF00664 ABC_membrane 1.3e-46 58-333
700-971
IPR003439 ABC transporter-like
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0016887 ATPase activity    
HMMPfam PF00005 ABC_tran 9.4e-24 422-547
1064-1190
ProfileScan PS50893 ABC_TRANSPORTER_2 24.543 380-616
1022-1259
IPR003593 AAA+ ATPase domain
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0017111 nucleoside-triphosphatase activity    
HMMSmart SM00382 ATPases 1.3e-16 407-593
1049-1242
IPR011527 ABC transporter, transmembrane domain, type 1
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006810 transport    
Cellular Component GO:0016021 integral to membrane    
Molecular Function GO:0042626 ATPase activity, coupled to transmembrane movement of substances    
Biological Process GO:0055085 transmembrane transport    
superfamily SSF90123 ABC 7.9e-58 25-537
679-1007
IPR017871 ABC transporter, conserved site
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0016887 ATPase activity    
PatternScan PS00211 ABC_TRANSPORTER_1 NA 519-533
1162-1176
IPR017940 ABC transporter, integral membrane type 1
ProfileScan PS50929 ABC_TM1F 43.167 58-345
701-987
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 1.3e-67 380-602
1022-1245
no_ID  
Gene3D G3DSA:1.20.1560.10 no description 1.2e-49 44-362
688-1007
Gene3D G3DSA:3.40.50.300 no description 1.7e-84 380-607
1021-1253
HMMPanther PTHR24222 FAMILY 0 32-1266
HMMPanther PTHR24222:SF3 SUBFAMILY 0 32-1266
Seg seg seg NA 201-214
342-350
634-662
Wolf-PSORT
Lj3g3v2477640.1	plas 10, chlo 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v2477640.1